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. 2018 Nov;20(6):789–801. doi: 10.1016/j.jmoldx.2018.06.005

Figure 5.

Figure 5

Visualization of three genes with known technically challenging regions. Exons in otoancorin (OTOA) or stereocilin (STRC), with high homology to other genomic sequences, and GC-rich first exon in the potassium channel, KCNQ1. Mapping quality (MQ) and depth of coverage (DP) plots are displayed for OTOA, KCNQ1, and STRC. Green bars indicate exons with both average MQ ≥ 20 and minimum DP ≥ 15; yellow bars, either average MQ < 20 or minimum DP < 15; red bars, poor exons, where both average MQ < 20 and minimum DP < 15. Each bar in MQ and DP plots shows minimum and maximum range for each exon, and average is shown by a tick mark in the middle of each bar.