. 2018 Nov;20(6):789–801. doi: 10.1016/j.jmoldx.2018.06.005

Table 1.

Curated Transcripts for Category 1, 2, and 3 Genes

Gene	Category	Transcript set
ATP6V1B1	1	NM_001692.3
ALMS1	1	NM_015120.3
BSND	1	NM_057176.2
CEACAM16	1	NM_001039213.3
CISD2	1	NM_001008388.4
CLPP	1	NM_006012.2
COL4A3	1	NM_000091.4
COL4A4	1	NM_000092.4
EPS8	1	NM_004447.5
ESPN	1	NM_031475.2
ESRRB	1	NM_004452.3
GIPC3	1	NM_133261.2
GJB2	1	NM_004004.5
GPR98 (ADGRV1)	1	NM_032119.3
GRHL2	1	NM_024915.3
GRXCR1	1	NM_001080476.2
LARS2	1	NM_015340.3
LHFPL5	1	NM_182548.3
MYH9	1	NM_002473.5
MYO3A	1	NM_017433.4
MYO15A	1	NM_016239
OTOGL	1	NM_173591.3
POU3F4	1	NM_000307.4
POU4F3	1	NM_002700.2
PTPRQ	1	NM_001145026.1
S1PR2	1	NM_004230.3
SIX1	1	NM_005982.3
SLC26A4	1	NM_000441.1
SLC52A3	1	NM_033409.3
SLITRK6	1	NM_032229.2
SMPX	1	NM_014332.2
SNAI2	1	NM_003068.4
SOX10	1	NM_006941.3
STRC	1	NM_153700.2
TECTA	1	NM_005422.2
TMC1	1	NM_138691.2
TMIE	1	NM_147196.2
TPRN	1	NM_001128228.2
ACTG1	2	NM_001199954.1 ^∗
BCS1L	2	NM_004328.4 ^∗
CATSPER2	2	NM_001282310.1 ^∗
CCDC50	2	NM_178335.2 ^∗
CEP78	2	NM_001098802.1 ^∗
CHD7	2	NM_017780.3 ^∗
COCH	2	NM_001347720.1 ^∗
COL11A2	2	NM_080680.2 ^∗
COL4A5	2	NM_033380.2 ^∗
DFNA5	2	NM_004403.2 ^∗
DFNB59 (PJVK)	2	NM_001042702.3 ^∗
DIABLO	2	NM_019887.5 ^∗
EDN3	2	NM_207034.2 ^∗
GJB6	2	NM_001110219.2 ^∗
*GPSM2*	2	NM_013296.4
HARS	2	NM_002109.5 ^∗
HARS2	2	NM_012208.2 ^∗
ILDR1	2	NM_001199799.1 ^∗
KARS	2	NM_001130089.1 ^∗
KCNE1	2	NM_000219.5 ^∗
KCNQ4	2	NM_004700.3 ^∗
KITLG	2	NM_000899.4 ^∗
MARVELD2	2	NM_001038603.2 ^∗
MYH14	2	NM_001145809.1 ^∗
*MYO6*	2	NM_001300899.1
NLRP3	2	NM_004895.4 ^∗
PRPS1	2	NM_002764.3 ^∗
SLC52A2	2	NM_024531.4 ^∗
SYNE4	2	NM_001039876.2
*TBC1D24*	2	NM_020705.2
USH1G	2	NM_173477.4 ^∗
USH2A	2	NM_206933.2 ^∗
	2	NM_007123.5
WFS1	2	NM_006005.3 ^∗
ADCY1	3	NM_021116.2 ^∗^†
	3	NM_001281768.1
CABP2	3	NM_016366.2 ^†
	3	NM_001318496.1 ^∗
CACNA1D	3	NM_000720.3 ^∗^†
	3	NM_001128839.2
CDC14A	3	NM_033312.2 ^∗^†
	3	NM_003672.3
	3	NM_033313.2
	3	NM_001319210.1
CDH23	3	NM_022124.5 ^∗^†
	3	NM_001171935.1
	3	NM_001171932.1
	3	NM_052836.3
	3	NM_001171931.1
	3	NM_001171930.1
	3	NM_001171936.1
CD164	3	NM_006016.5 ^∗^†
	3	NM_001142404.2
CIB2	3	NM_006383 ^∗^†
	3	NM_001301224
CLIC5	3	NM_001114086.1 ^∗^†
	3	NM_016929.4
	3	NM_001256023.1
CLDN14	3	NM_144492 ^∗^†
CLRN1	3	NM_174878.2 ^†
	3	NM_052995.2
	3	NM_001195794.1 ^∗
	3	NM_001256819.1
DFNB31 (WHRN)	3	NM_015404.3 ^∗^†
	3	NM_001346890.1
DIAPH1	3	NM_005219.4 ^∗^†
	3	NM_001314007.1
EDNRB	3	NM_000115.4 ^∗^†
	3	NM_001201397.1
	3	NM_003991.3
EYA1	3	NM_000503.5 ^∗^†
	3	NM_172060.3
EYA4	3	NM_004100.4 ^†
	3	NM_172105.3
	3	NM_001301013.1 ^∗
HGF	3	NM_000601.5 ^∗^†
	3	NM_001010931.2
	3	NM_001010934.2
HSD17B4	3	NM_001199291.1 ^∗^†
	3	NM_000414.3
	3	NM_0012929027.1
	3	NM_001292028.1
KCNQ1	3	NM_000218.2 ^∗^†
	3	NM_181798.1
LOXHD1	3	NM_144612.6 ^∗^†
	3	NM_001145472.2
LRTOMT	3	NM_00145309.5 ^∗^†
	3	NM_001205138.3
	3	NM_001145307.4
MITF	3	NM_000248.3 ^†
	3	NM_198159.2 ^∗
MSRB3	3	NM_001193460.1 ^†
	3	NM_198080.3 ^∗
MYO7A	3	NM_000260.3 ^∗^†
	3	NM_001127179.2
OSBPL2	3	NM_144498.2 ^∗^†
	3	NM_001278649.1
OTOA	3	NM_144672.3 ^∗^†
	3	NM_001161683.1
	3	NM_170664.2
OTOF	3	NM_001287489.1 ^†
	3	NM_194248.2 ^∗
	3	NM_194322.2
OTOG	3	NM_001277269.1 ^∗^†
	3	NM_001292063.1
PAX3	3	NM_001127366.2 ^†
	3	NM_181459.3 ^∗
	3	NM_181457.3
	3	NM_181461.3
	3	NM_000438.5
	3	NM_013942.4
PCDH15	3	NM_001142763.1 ^∗^†
	3	NM_001142769.1
	3	NM_001142771.1
	3	NM_001354430.1
	3	NM_001142770.1
PDZD7	3	NM_001195263.1 ^∗^†
	3	NM_001351044.1
	3	NM_024895.4
P2RX2	3	NM_174873.1 ^†
	3	NM_170683.2 ^∗
	3	NM_001282164.1
	3	NM_001282165.1
RIPOR2	3	NM_014722.3 ^∗^†
	3	NM_001286445.1
	3	NM_001286446.1
	3	NM_015864.3
RDX	3	NM_002906.3 ^∗^†
	3	NM_001260494.1
SERPINB6	3	NM_004568.5 ^†
	3	NM_001271822.1
	3	NM_001271823.1
TIMM8A	3	NM_004085.3 ^∗^†
	3	NM_001145951.1
TMPRSS3	3	NM_024022.2 ^∗^†
	3	NM_032405.1
TRIOBP	3	NM_001039141.2 ^∗^†
	3	NM_138632.2
USH1C	3	NM_153676.3 ^∗^†
	3	NM_001297764.1

Transcript numbers were taken from RefSeqGene: https://www.ncbi.nlm.nih.gov/refseq/rsg. The minimal curated transcript set, with all unique exons for categories 1, 2, and 3, is listed. Category 2 genes, in which the curated transcript is not the longest one, are in bold.

^∗

Longest transcript.

^†

Primary transcript.