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. 2018 Oct 22;9:2490. doi: 10.3389/fmicb.2018.02490

Table 3.

Parameters, their definitions, source and values as applied in the proposed model.

Parameter Definition Source/Expression References Value Unit
S Salinity Calculated based on medium formula / 61
T Temperature Measured / 293.15 K
K1 Equilibrium constant for H2CO3 dissociation 10(8.712+9.46×103·S8.56×105·S21355.1T −1.7976·ln(T)) Millero et al., 2002 10−5.864 M
K2 Equilibrium constant for HCO3- dissociation 10(17.001+0.01259·S+7.9334×105·S2936.291T+1.87354·ln(T)+2.61471·ST0.07479S2T) Millero et al., 2002 10−8.893 M
Kw Solubility product of water / DOE, 1994 10−13.5 M2
KTris Equilibrium constant for Tris deprotonation Product data sheet (Sigma), ionic strength corrected Johnson, 1982 10−8.1 M
k+1 Rate constant: CO2+H2Ok+1k-1HCO3-+H+ e1246.98-6.19×104T-183·ln(T) Schulz et al., 2006 0.0238 s−1
k−1 k+1/K1 Eigen, 1964 1.74 × 104 M−1·s−1
k+2 Rate constant: CO2+OH-k+2k-2HCO3- A·e-90166.83R·T/Kw ** 6.74 × 103 M−1·s−1
k−2 k+2·Kw/K1 Schulz et al., 2006 1.56 × 10−4 s−1
k+3H+ Rate constant: CO32-+H+k+3H+k-3H+HCO3- / Eigen, 1964 5.00 × 1010 M−1·s−1
k-3H+ k+3H+·K2 Schulz et al., 2006 63.96 s−1
k+3OH- Rate constant: HCO3-+OH-k+3OH-k-3OH-CO32-+H2O / Eigen, 1964 6.00 × 109 M−1·s−1
k-3OH- k+3OH-·Kw/K2 Schulz et al., 2006 1.48 × 105 s−1
k+4 Rate constant: H2Ok+4k-4H++OH- Eigen (1964) Eigen, 1964 0.014 M·s−1
k−4 k+4/Kw Schulz et al., 2006 4.43 × 1010 M−1·s−1
k+5 Rate constant: TrisHk+5k-5Tris-+H+ k+5·KTris Schulz et al., 2006 3.16 × 103 s−1
k−5 10·k-3H+ Schulz et al., 2006 5.00 × 1011 M−1·s−1
υmax, CO2 Maximum CO2 utilization/uptake rate Artificial value / 5 × 10−4 M·s−1
KS, CO2 Half saturation constant for CO2 utilization/uptake Artificial value / 10−3 M
νmax,HCO3- Maximum HCO3- utilization/uptake rate Artificial value / 5 × 10−4 M·s−1
KS,HCO3- Half saturation constant for HCO3- utilization/uptake Artificial value / 10−3 M
ΥHCO3-,O2 Net HCO3- bicarbonate utilization rate Artificial value / 0.6 /
FeCA* pH independent eCA enhancement factor Artificial value *** 100 /
FeCA Enhancement factor for eCA catalysis, For k+1: FeCA*×10-8[H+]+10-8 Steiner et al., 1975 / /
For k−1: FeCA*×[H+][H+]+10-8 Steiner et al., 1975
Lb Effective thickness of diffusion boundary layer between bulk medium and the surface of the biomass Estimated / 20 μm
DO2 Diffusion coefficient of dissolved oxygen / Wolf et al., 2007 2.00 × 10−9 m2·s−1
DCO2 Diffusion coefficient of dissolved free CO2 / Wolf et al., 2007 1.91 × 10−9 m2·s−1
DHCO3- Diffusion coefficient of HCO3- ion / Wolf et al., 2007 1.18 × 10−9 m2·s−1
DCO32- Diffusion coefficient of CO32- ion / Wolf et al., 2007 9.14 × 10−10 m2·s−1
DTris Diffusion coefficient of Tris buffer Estimated / 1.0 × 10−10 m2·s−1
DH+ Diffusion coefficient of proton / Lee and Rasaiah, 2013 6.82 × 10−9 m2·s−1
DOH- Diffusion coefficient of hydroxyl ion / Lee and Rasaiah, 2013 6.8 × 10−9 m2·s−1

*Refer to Table 2 and Figure 2; if not specified values shown here were used in the simulation.

**

A = 499002.24·e4.2986× 10−4·S2+5.75499 × 10−5·S,

R is the universal gas constant, equals 8.31451 J/mol.

***

Higher values indicate stronger eCA activity, a value of 1 indicates no eCA activity.