Table 1.

Twenty-six transcription factors in the 248 genes highly expressed in low-CK CPL4_RNAi.

AGI	Symbol	Class	Gene description	FPKM
				W(-)	C4(-)	W(+)	C4(+)
DNA binding transcription factor activity (GO:003700); Developmental Process (GO:0032502)
AT5G65640	bHLH093	I-a	beta HLH protein 93	27.19	40.65	33.08	61.60
AT1G75390	bZIP44	IV	basic leucine-zipper 44	11.19	23.93	21.48	45.74
AT1G10480	ZFP5	IV	zinc finger protein 5	9.27	17.16	17.42	38.20
AT5G64060	NAC103	IV	NAC domain containing protein 103	1.24	14.53	3.32	23.98
AT2G21650	MEE3	IV	Homeodomain-like superfamily protein	1.16	3.93	3.95	23.09
AT4G37750	ANT	IV	Integrase-type DNA-binding superfamily protein	3.83	9.68	14.78	22.70
AT5G03790	HB51	II	homeobox 51	0.56	3.70	1.18	8.21
AT3G50060	MYB77	II	myb domain protein 77	1.42	3.24	2.22	5.45
AT3G12720	MYB67	IV	myb domain protein 67	1.88	2.99	3.14	4.88
AT1G12980	ESR1	III	Integrase-type DNA-binding superfamily protein	0.40	0.77	1.39	4.54
AT1G02250	NAC005	III	NAC domain containing protein 5	0.88	0.37	2.65	3.98
AT5G03680	PTL	IV	Duplicated homeodomain-like superfamily protein	0.50	2.01	1.09	3.60
AT1G01060	LHY	II	Homeodomain-like superfamily protein	1.01	2.24	0.74	3.44
AT4G17785	MYB39	I	myb domain protein 39	1.31	0.69	1.66	2.83
DNA binding transcription factor activity (GO:0003700)
AT5G25190	ESE3	IV	Integrase-type DNA-binding superfamily protein	12.76	41.18	28.78	77.40
AT1G14600	-	II	Homeodomain-like superfamily protein	3.02	15.34	4.37	23.96
AT3G07340	-	IV	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	3.87	11.56	8.46	19.64
AT2G17770	BZIP27	II	basic region/leucine zipper motif 27	1.62	3.10	2.52	7.42
AT4G39410	WRKY13	II	WRKY DNA-binding protein 13	0.52	4.82	0.69	7.41
AT2G46130	WRKY43	II	WRKY DNA-binding protein 43	1.53	3.45	2.82	6.72
AT3G60390	HAT3	I	homeobox-leucine zipper protein 3	1.81	1.62	2.39	4.94
AT5G11060	KNAT4	II	homeobox protein knotted-1-like 4	0.85	1.91	1.19	3.50
AT1G80590	WRKY66	I	WRKY DNA-binding protein 66	1.54	1.38	2.10	3.46
AT2G47520	ERF71	II	Integrase-type DNA-binding superfamily protein	0.48	1.71	0.57	3.19
AT1G75240	HB33	III	homeobox protein 33	0.23	0.11	1.10	2.10
AT5G03720	HSFA3	II	heat shock transcription factor A3	0.45	0.94	0.50	1.67

W(-), wild type on SIM without 2iP; W(+), wild type on SIM with 0.05 mg/L 2iP; C4(-); CPL4_RNAi on SIM without 2iP; C4(+), CPL4_RNAi on SIM with 0.05 mg/L 2IP.