Table 1.
The collected gene expression datasets in HCCDB
| Dataset ID | No. of adjacent tissue samples | No. of HCC samples | No. of other normal tissue samples | Platform | Source |
|---|---|---|---|---|---|
| HCCDB1 | 97 | 100 | Rosetta/Merck Human RSTA Custom Affymetrix 1.0 microarray | GSE22058 | |
| HCCDB3 | 243 | 268 | Healthy 6; Cirrhotic 40 | Rosetta/Merck Human RSTA Affymetrix 1.0 microarray | GSE25097 |
| HCCDB4 | 193 | 240 | Illumina HumanHT-12 V4.0 expression beadchip | GSE36376 | |
| HCCDB6 | 220 | 225 | Affymetrix Human Genome U133A 2.0 Array | GSE14520 | |
| HCCDB7 | 82 | 80 | Human 6k Transcriptionally Informative Gene Panel for DASL | GSE10143 | |
| HCCDB8 | 0 | 91 | Affymetrix Human Genome U133 Plus 2.0 Array | GSE9843 | |
| HCCDB9 | 0 | 164 | Illumina HumanRef-8 WG-DASL v3.0 | GSE19977 | |
| HCCDB11 | 48 | 88 | Illumina Human Whole-Genome DASL HT | GSE46444 | |
| HCCDB12 | 80 | 81 | Agilent-014850 Whole Human Genome Microarray 4x44K G4112F | GSE54236 | |
| HCCDB13 | 168 | 228 | Affymetrix Human Genome U219 Array | GSE63898 | |
| HCCDB14 | 0 | 88 | Illumina HumanHT-12 V4.0 expression beadchip | GSE43619 | |
| HCCDB15 | 49 | 356 | RNA-Seq | TCGA-LIHC | |
| HCCDB16 | 60 | 60 | Healthy 6 | Affymetrix Human Gene 1.0 ST Array | GSE64041 |
| HCCDB17 | 52 | 115 | Illumina HumanHT-12 V4.0 expression beadchip | GSE76427 | |
| HCCDB18 | 177 | 212 | RNA-Seq | ICGC-LIRI-JP | |
| Total | 1469 | 2396 | Healthy 12; Cirrhotic 40 | – | – |