Table 2. Binding parameters obtained from experimental and theoretical studies at pH 7.4 and T = 309.5K.
Experimental | Theoretical | ||||||
---|---|---|---|---|---|---|---|
Cyclic Voltammetric | UV-Vis spectroscopic | Molecular docking | |||||
complexes | Kb/M1×105 | -ΔG/kJmol-1 | Binding site size (s)/bp | Kb/M-1×105 | -ΔG/kJmol-1 | Kb/M-1×105 | -ΔG/kJmol-1 |
Binary complexes | |||||||
AA–DNA | 0.034 | 20.92 | 2.00 | 0.02 | 19.55 | 0.006 | 16.46 |
DXH–DNA | 5.00 | 33.76 | 1.60 | 0.17 | 25.06 | 3.55 | 32.88 |
EpiDXH–DNA | 0.11 | 23.94 | 1.31 | 0.14 | 24.56 | 0.43 | 27.45 |
DNR–DNA | 17.2 | 36.94 | 1.51 | 11.80 | 63.90 | 42.81 | 39.29 |
Binary complexes | |||||||
DXH–AA | 0.0076 | 17.06 | ---------- | 0.017 | 19.14 | 0.064 | 21.71 |
EpiDXH–AA | 0.006 | 16.46 | ----------- | 0.016 | 18.98 | 0.064 | 21.71 |
DNR–AA | 0.00089 | 11.55 | ---------- | 0.028 | 20.42 | 0.047 | 20.94 |
Route–1 Tert. complexes | |||||||
DXH–AA–DNA | 200.0 | 43.25 | 2.72 | 8.72 | 35.19 | 7.31 | 34.74 |
EpiDXH–AA–DNA | 3.99 | 33.18 | 1.55 | 5.50 | 34.01 | 5.93 | 34.20 |
DNR–AA-DNA | 31.91 | 38.53 | 2.00 | 23.23 | 31.40 | 24.61 | 37.86 |
Route–2 Tert. complexes | |||||||
DXH–DNA–AA | 30.0 | 38.37 | 0.81 | 1.36 | 30.41 | 2.73 | 32.20 |
EpiDXH–DNA–AA | 1.21 | 30.11 | 0.55 | 2.49 | 31.97 | 1.54 | 30.73 |
DNR–DNA–AA | 2.31 | 31.779 | 1.00 | 0.23 | 25.84 | 4.61 | 33.55 |