Table 1.
Top 20 single SNP associations.
| SNP | Chr | Pos | MAF | bf(y) | bf(ỹ) | sbf(y) | sbf(ỹ) | p(y) | p(ỹ) |
|---|---|---|---|---|---|---|---|---|---|
| rs12120962 | 1 | 10.53 | 0.384 | 3.88 (5) | −0.90 | 4.56 (4) | −0.21 | 5.63 (5) | 0.01 |
| rs12127400 | 1 | 10.54 | 0.384 | 3.61 (9) | −0.90 | 4.29 (8) | −0.21 | 5.34 (9) | 0.01 |
| rs4656461 | 1 | 163.95 | 0.140 | 5.71 (2) | −0.57 | 6.26 (2) | −0.03 | 7.51 (2) | 0.46 |
| rs7411708 | 1 | 163.99 | 0.428 | 3.69 (8) | −0.68 | 4.38 (7) | 0.01 | 5.43 (8) | 0.52 |
| rs10918276 | 1 | 163.99 | 0.427 | 3.59 (10) | −0.66 | 4.28 (9) | 0.03 | 5.33 (10) | 0.54 |
| rs7518099 | 1 | 164.00 | 0.140 | 6.04 (1) | −0.61 | 6.58 (1) | −0.07 | 7.85 (1) | 0.38 |
| rs972237 | 2 | 125.89 | 0.119 | 3.05 (15) | −0.62 | 3.56 (17) | −0.11 | 4.65 (18) | 0.31 |
| rs2728034 | 3 | 2.72 | 0.090 | 3.80 (6) | −0.62 | 4.27 (10) | −0.15 | 5.45 (7) | 0.22 |
| rs7645716 | 3 | 46.31 | 0.254 | 3.34 (11) | −0.88 | 3.98 (11) | −0.16 | 5.03 (11) | 0.21 |
| rs7696626 | 4 | 8.73 | 0.023 | 2.96 (18) | −0.33 | 3.20 (42) | −0.01 | 4.70 (16) | 0.31 |
| rs301088 | 4 | 53.53 | 0.473 | 2.95 (20) | −0.81 | 3.64 (16) | −0.11 | 4.65 (17) | 0.31 |
| rs2025751 | 6 | 51.73 | 0.466 | 3.78 (7) | −0.75 | 4.47 (6) | −0.06 | 5.53 (6) | 0.41 |
| rs10757601 | 9 | 26.18 | 0.443 | 3.09 (13) | −0.79 | 3.78 (12) | −0.10 | 4.80 (13) | 0.33 |
| rs10506464 | 12 | 62.50 | 0.164 | 2.97 (17) | −0.75 | 3.54 (18) | −0.18 | 4.59 (19) | 0.15 |
| rs10778292 | 12 | 102.78 | 0.140 | 4.00 (4) | −0.75 | 4.54 (5) | −0.21 | 5.68 (4) | 0.02 |
| rs2576969 | 12 | 102.80 | 0.271 | 3.07 (14) | −0.85 | 3.71 (14) | −0.20 | 4.75 (14) | 0.08 |
| rs17034938 | 12 | 102.85 | 0.127 | 3.23 (12) | −0.71 | 3.75 (13) | −0.19 | 4.85 (12) | 0.13 |
| rs1288861 | 15 | 43.50 | 0.120 | 2.95 (19) | −0.45 | 3.46 (20) | 0.06 | 4.54 (21) | 0.59 |
| rs4984577 | 15 | 93.76 | 0.367 | 3.02 (16) | −0.64 | 3.69 (15) | 0.04 | 4.71 (15) | 0.56 |
| rs12150284 | 17 | 9.97 | 0.353 | 4.95 (3) | −0.75 | 5.63 (3) | −0.07 | 6.75 (3) | 0.38 |
The SNPs chosen have top 20 BF values using σb = 0.2. The rankings by three test statistics are given in the parentheses. ỹ is obtained by permuting y once. SNP IDs are in bold if they are mentioned specifically in the main text. The column names are explained as following. Pos: genomic position in megabase pair according to HG18; bf(y): log10 BF(y); bf(ỹ): log10 BF(ỹ); sbf(y): log10 sBF(y); sbf(ỹ): log10 sBF(ỹ); p(y): −log10 pB(y); and p(ỹ): −log10 pB(ỹ).