Table 1.
Domain architecture and designations for GGDEF/EAL/HD-GYP domain-encoding genes in Streptomyces venezuelae.
| Gene Name | vnz Number (StrepDB) | sven Number (StrepDB) | Domain Architecture | Enzymatic Activity | References/Comments |
|---|---|---|---|---|---|
| cdgA | vnz12760 | sven2604 | PAS-PAC-GGDEF-EAL | DGC | (den Hengst et al., 2010) |
| cdgB | vnz19920 | sven4034 | GAF-PAS-PAC-GGDEF | DGC | (Tran et al., 2011) |
| cdgC | vnz25635 | sven5187 | 10TM-PAS-PAC-GGDEF-degEAL | DGC | This study |
| cdgD | vnz19760 | sven3999 | GGDEF | ∗DGC | |
| cdgE | vnz22740 | sven4602 | GAF-GGDEF | ∗DGC | |
| cdgF | vnz02140 | sven0451 | 10TM-PAS-PAC-GGDEF-EAL | ∗DGC/PDE | |
| rmdA | vnz33675 | sven6830 | PAS-PAC-GGDEF-EAL | PDE | (Hull et al., 2012) |
| rmdB | vnz25525 | sven5165 | 6TM-GGDEF-EAL | PDE | (Hull et al., 2012) |
| hdgA | vnz24090 | sven4872 | 6TM-HD-GYP | ∗PDE | |
| hdgB | vnz24095 | sven4873 | 6TM-degHD-GYP | ∗none | |
| pcdgG | pvnz37430 | GGDEF | ∗DGC | on plasmid |
∗Predicted activity. deg, degenerate; TM, transmembrane.