Table 1.
Primers used in this work.
Name | Sequence (5′-3′) | T1 | Bp2 | Reference |
---|---|---|---|---|
RPSLF | CCAGCGCTTAAAAAT TGTCC | 55 | 247 | Olkkola et al., 2010 |
RPSLR | TATCAAGAGCACCA CGAACG | |||
INT1F | GGCTCTCGGGTAAC ATCAAGG | 54 | 242 | Leverstein-van Hall et al., 2002 |
INT1R | TCAGGAGATCGGAA GACCTC | |||
CSF | GGCATCCAAGCAGCAAG | 56 | VAR3 | Lévesque et al., 1995 |
CSR | AAAAGCAGACTTGA CCTGA | |||
SAF | TGCAAAA(G/A)CC(G/C) GA(A/G)GATATGG | 56 | 305 | This work |
SAR | TTCCTT(G/T)CG(G/A) CATA(G/T)CC(C/T)TT | |||
SBF | GATTGT(T/C)CG(T/C)CAT GAGCTGCT | 57 | 327 | This work |
SBR | GTGCTATCCAGGCAGC CGGTT | |||
SCF | TGCCT(A/C)AAATTGG(G/A) T(G/A)AGTT | 52 | 368 | This work |
SCR | ACCTAGCCA(A/G)ATTTCA AA(A/G)CCAAA | |||
STREJF | TGCAAAGCGAAAA AAGAAT | 49 | 878 | This work |
STREJR | TTATAATTTTCTTAAAAT TTTGCAAT | |||
STRECF | TGCAAAATCAAGATAAAT TTTTAAAAC | 51 | 899 | This work |
STRECR | TTACAATTTTCCTAAAAT TTTACAAT | |||
STREFF | GTATGCGCAAAAATGAT TAAAG | 50 | 1110 | This work |
STREFR | AAGGAAAAATTTAAATAT TGGTTTCA | |||
1Annealing temperatures for PCR. 2PCR-Product size in bp. 3Variable size depending on gene-cassette structure (Lévesque et al., 1995).