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. 2018 Oct 29;8:15981. doi: 10.1038/s41598-018-34425-4

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Isolation of cagA-positive H. pylori from macaque stomach. (a) Molecular phylogenetic tree based on MLST analysis. Seven H. pylori genes (atpA, efp, mutY, ppa, trpC, urel, yphC) were used to perform MLST analysis (left). Magnified view of the phylogenetic tree in the vicinity of Hp_TH2099 (right). (b) fineSTRUCTURE analysis of the Hp_TH2099 genome. The color of each cell of the matrix indicates the expected number of DNA chunks imported from a donor genome (column) to a recipient genome (row). The boundaries between named populations are marked with lines. Detailed information on H. pylori isolates used in this analysis is shown in Supplementary Table S1.