Table 1.
Alignment of Type IV secretion system in Hp_TH2099.
| gene ID | presence (1) or absence (0) in TH2099_contigs | % identity | % aligned length |
|---|---|---|---|
| HP0519 | 1 | 92.16 | 102.89 |
| HP0520 | 0 | 88.46 | 7.47 |
| HP0522 | 1 | 95.09 | 100 |
| HP0523 | 1 | 92.16 | 100 |
| HP0524 | 1 | 95.55 | 100 |
| HP0525 | 1 | 97.68 | 100 |
| HP0526 | 1 | 98.67 | 100 |
| HP0527 | 0 | 96.88 | 28.86 |
| HP0528 | 1 | 97.64 | 100 |
| HP0529 | 1 | 97.01 | 100 |
| HP0530 | 1 | 97.36 | 100 |
| HP0531 | 0 | 76.36 | 8.37 |
| HP0532 | 1 | 98.56 | 57.77 |
| HP0533 | 1 | 95.56 | 100 |
| HP0534 | 0 | 97.51 | 34.01 |
| HP0535 | 0 | 100 | 4.46 |
| HP0536 | 0 | 90.48 | 6.09 |
| HP0537 | 0 | 82.86 | 3.09 |
| HP0538 | 1 | 97.72 | 100 |
| HP0539 | 1 | 95.18 | 95.94 |
| HP0540 | 1 | 95.81 | 100 |
| HP0541 | 1 | 96.59 | 100 |
| HP0542 | 1 | 97.67 | 100 |
| HP0543 | 1 | 96.41 | 100 |
| HP0544 | 1 | 97.96 | 91.43 |
| HP0545 | 1 | 96.15 | 100 |
| HP0546 | 1 | 94.25 | 100 |
| HP0547 | 1 | 92.14 | 100.08 |
| HP0549 | 1 | 95.7 | 100 |
The cagPAI gene sequences of Hp_TH2099 were extracted from whole genome sequencing data and were aligned with cagPAI genes of 26695 strain by BLAST software. A BLAST matches with greater than 70% identity and greater than 50% of the locus length were indicated as “Presence”.