Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2018 Oct 29;18:537. doi: 10.1186/s12879-018-3446-5

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

Fig. 4 — Evaluation of the metagenomic NGS workflow according to the viral genome type. a Correlation between the results of metagenomic NGS and viral real-time PCR for validated respiratory samples tested positive with viral PCR. Normalized number of reads (RPKM) obtained for targeted virus are displayed against the real-time PCR Ct values for fragmented ssRNA virus (influenza virus) linear dsDNA virus (adenovirus, Epstein-Baar virus, cytomegalovirus, human herpes virus-6) linear ssDNA (human bocavirus) and linear ssRNA (human rhinovirus, respiratory syncytial virus, parainfluenza virus, human coronavirus, human metapneumovirus and measles virus). The correlation coefficients are shown for each viral genome type. b RPKM normalized by Ct for each viral genome type of validated respiratory samples tested positive with viral PCR. Bars show median and interquartile ranges, p-values calculated with the Mann-Whitney U test are shown