Table 2: Compendium of gene expression datasets.
15 whole-transcriptome studies with at least 40 patients with late stage, high-grade serous histology from the curatedOvarianData compendium consisting of 1,770 patients. 13 of these datasets provided 1,581 patients with survival data. Sample size column proves the number of samples : number with survival data : number deceased (median survival in months).
| GEO(34) Accession | Sample Size | Microarray Platform | # Features |
|---|---|---|---|
| TCGA(4) | 464:452:239 (43) | Affymetrix HT HG-U133A | 12833 |
| GSE17260(35) | 43:43 22 (29) | Agilent-012391 Whole HG Oligo | 19596 |
| GSE14764(36) | 41:41:13 (30) | Affymetrix HG-U133A | 12752 |
| GSE18520(37) | 53:53:41 (21) | Affymetrix HG-U133 Plus 2.0 | 20282 |
| GSE26193(38) | 47:47:39 (34) | Affymetrix HG-U133 Plus 2.0 | 20282 |
| PMID17290060(39) | 59:59:36 (34) | Affymetrix HG-U133A | 12752 |
| GSE51088(40) | 85:84:69 (44) | Agilent-012097 Human 1A Microarray (V2) G4110B | 15299 |
| GSE13876(41) | 98:98:72 (22) | Operon human v3 ~35K 70-mer two-color oligonucleotide microarrays | 13846 |
| GSE49997(42) | 132:122:40 (23) | ABI HG Survey Microarray Version 2 | 16760 |
| E.MTAB.386(43) | 128:128:73 (30) | Illumina humanRef-8 v2.0 beadchip | 10572 |
| GSE32062(44) | 129:129:60 (40) | Agilent-014850 Whole HG 4×44K G4112F | 19596 |
| GSE9891(3) | 142:140:72 (29) | Affymetrix HG-U133 Plus 2.0 | 20282 |
| GSE26712(45) | 185:185:129 (39) | Affymetrix HG-U133A Array | 12752 |
| GSE20565(46) | 89 (0) | Affymetrix HG-U133 Plus 2.0 | 20282 |
| GSE2109 | 79 (0) | Affymetrix HG-U133Plus2 | 20282 |