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. 2018 Oct 18;14(10):e1006541. doi: 10.1371/journal.pcbi.1006541

Fig 1. Schematic overview of RAVEN toolbox version 2.0.

Fig 1

RAVEN was significantly enhanced for de novo draft model reconstruction by integrating knowledge from different sources (e.g. KEGG and MetaCyc). It has better import/export support to relevant formats, and especially improved compatibility with the COBRA Toolbox by resolving previously conflicting function names and providing a bi-directional model conversion function. As a MATLAB toolbox, RAVEN provides one unified environment for both model reconstruction and simulation analysis (e.g. FSEOF) and allows scripting for more flexible operations.