Appendix 1—table 5. Likelihood scores for different substitution models calculated with Jmodeltest 2.1 and statistical model selection based on Akaike and Bayesian Information Criteration (AIC and BIC).
Best model is assumed to have the lowest criteration value. Shown are the top 10 AIC models. Substitution model used for Bayesian inference marked in bold.
| Subst. model | -lnL | AIC | Δ AIC | BIC | Δ BIC |
|---|---|---|---|---|---|
| GTR | 8837.6437 | 18567.2875 | 0.0 | 21041.0025 | 7.0748 (2) |
| GTR + I | 8837.6747 | 18569.3494 | 2.0619 (2) | 21048.6109 | 14.6832 (5) |
| GTR + G | 8838.9842 | 18571.9684 | 4.6809 (3) | 21051.2299 | 17.3022 (6) |
| GTR + I + G | 8839.0077 | 18574.0153 | 6.7278 (4) | 21058.8233 | 24.8955 (8) |
| TPM1uf | 8845.426 | 18576.852 | 9.5645 (5) | 21033.9277 | 0.0 |
| TPM1uf + I | 8845.4446 | 18578.8891 | 11.6016 (6) | 21041.5113 | 7.5836 (3) |
| TPM1uf + G | 8846.7354 | 18581.4709 | 14.1834 (7) | 21044.093 | 10.1653 (4) |
| TPM1uf + I + G | 8846.7697 | 18583.5395 | 16.252 (8) | 21051.7081 | 17.7804 (7) |
| SYM | 8860.6478 | 18607.2955 | 40.008 (9) | 21064.3712 | 30.4435 (9) |
| SYM + I | 8860.6826 | 18609.3652 | 42.0777 (10) | 21071.9874 | 38.0596 (12) |