Fig. 7.

AGDP1 preferentially binds to long TEs. a Composition of the genomic locations of the AGDP1-enriched peaks. TE, transposable element. b Box plots of the length of TEs that are bound to AGDP1 and of all TEs in the Arabidopsis genome. Only TEs with >80% ovelap with ChIP-seq peaks were defined as “AGDP1 bound TEs”. Three sets of randomly distributed peaks with the same length distribution of the AGDP1 peaks served as control regions. c Metaplot analysis of AGDP1 enrichment over long and short TEs. Blue and light blue curves represent ChIP signals of replicate 1 and 2 over short TEs (length ≤ 4 kb). Red and light red curves represent ChIP signals of replicate 1 and 2 over long TEs (length > 4 kb), respectively. d Average DNA methylation levels along different length of TEs in different cytosine contexts. Gray and pink curves represent DNA methylation levels of wild-type and agdp1-1, respectively