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. 2018 Sep 19;33(12):2383–2387. doi: 10.1007/s00467-018-4083-3

Table 2.

In-silico characteristics of the detected COQ6 pathogenic variants

Variant (rs ID if applicable) Exon Protein change Conservation Prevalence in control population [MAF]* Grantham difference score Human Splicing Finder 3.0 PolyPhen2 SIFT, CADD Predictors
c.804delC 8 p.Leu269Trpfs*13 Residue conserved, within conserved region Not reported n/a Activation of an exonic cryptic donor site. Creation of an exonic ESS site n/a
c.1078C > T rs778856227 9 p. Arg360Trp Residue conserved, within conserved region Singleton 101 Creation of an exonic ESS site Deleterious (PolyPhen 1.0; SIFT 0.02, CADD 35)

Reference seq. ENST00000334571; NM_182476.2; UniProt peptide Q9Y2Z9.

Estimation based on data of 60,706 multiethnic individual genomes catalogued by the Exome Aggregation Consortium (ExAC; accessed 28th May 2018)

MAF minor allele frequency, n/a not applicable, ESS exonic splicing silencer