Table 1.

ddPCR oligo sequences for DNA quantification

Target	Primer Name	Sequence	Reference
CCR5	hCCR5-F1	5′-CCA GAA GAG CTG AGA CAT CCG-3′	Thomas, J.A. et al., 2006, Virology
	hCCR5-R1	5′-GCC AAG CAG CTG AGA GGT TAC T-3′
	FAM-hCCR5-P01	5′-/56-FAM/-TCC CCT ACA AGA AAC TCT CCC CGG-/3BHQ_1/-3′
LTR	RU5-F	5′-CTT AAG CCT CAA TAA AGC TTG CC-3′
	RU5-R	5′-GGA TCT CTA GTT ACC AGA GTC-3′
	RU5-Probe	5′-/5HEX/-AGT AGT GTG TGC CCG TCT G-/ZEN//3IaBkFQ/-3′
gag	HIV SCA 6F	5′-CAT GTT TTC AGC ATT ATC AGA AGG A-3′	Palmer, S. et al., 2003, J. Clin Microbiol
	HIV SCA 84R	5′-TGC TTG ATG TCC CCC CAC T-3′
	HIV SCA probe 32t	5′-/56-FAM/-CCA CCC CAC AAG ATT TAA ACA CCA TGC TAA-/ZEN//3IaBkFQ/-3′
tat Exon 1	TatRev1_F	5′-GCA TCC AGG AAG TCA GCC TA-3′
	TatRev1_R	5′-CTT CGT CGC TGT CTC CGC-3′
	TatRev1_probe	5′-/5HEX/-TC TTC CTG CCA TAG GAG ATG C-/3BHQ_1/-3′
tat/rev Exon 2	TatRev2_F	5′- GTG AAT AGA GTT AGG CAG GGA TA-3′
	msRNA-R	5′-GTC TCT GTC TCT CTC TCC ACC-3′
	msRNA Probe	5′-/56-FAM/-TCG GGC CTG TCG GGT CC-/3BHQ_1/-3′