Table 1.
General features of the Paracoccus yeei CCUG 32053 genome.
| General features | Chromosome | pYEE1 | pYEE2 | pYEE3 | pYEE4 | pYEE5 | pYEE6 | pYEE7 | pYEE8 |
|---|---|---|---|---|---|---|---|---|---|
| REP type | dnaA | repB1 | dnaA-like | repABC | repB2 | repC | Rep_3 | HTH_36 | HTH_36 |
| Size (bp) | 3 421 679 | 482 273 | 296 393 | 201 841 | 156 389 | 74 143 | 18 339 | 9 652 | 8 143 |
| G + C content (%) | 67.58% | 67.98% | 68.43% | 64.65% | 68.06% | 61.24% | 61.44% | 55.79% | 64.58% |
| Coding percentage | 90.04% | 88.7% | 91.7% | 78.8% | 91.3% | 89.04% | 76.3% | 81.9% | 63.0% |
| CDSs | 3 378 | 418 | 275 | 198 | 139 | 80 | 21 | 15 | 9 |
| Pseudogenes | 80 | 23 | 7 | 28 | 8 | 7 | 2 | – | 2 |
| tRNA genes | 50 | 1 | – | 1 | 1 | – | – | – | – |
| 16S-23S-5S rRNA operons | 3 | – | – | – | – | – | – | – | – |
| Core genesa | 871 | 4 | 14 | 4 | 7 | 0 | 0 | 0 | 0 |
| Species-specific genesb | 119 | 79 | 45 | 4 | 15 | 3 | 1 | 0 | 0 |
| Strain-specific genes | 148 | 47 | 29 | 35 | 12 | 6 | 4 | 2 | 3 |
| Complete prophages | 3 | – | – | – | – | – | – | – | – |
| GTA regions | 1 | – | – | – | – | – | – | – | – |
| Transposase genes (incl. truncated) | 58 | 15 | 3 | 29 | 7 | 7 | 3 | 1 | 1 |
| Complete ISs | 37 | 7 | 2 | 13 | 6 | 5 | 3 | 1 | – |
aconserved in all complete genomes of Paracoccus spp. bconserved in all complete genomes of P. yeei and not present in other Paracoccus spp. Genomes.