Table 2.
Putative virulence determinants of P. yeei CCUG 32053.
| # | Gene location | Locus tag (PY32053_) | Predicted function | Closest homologs encoded in complete P. yeei genomes |
|
|---|---|---|---|---|---|
| P. yeei TT13 | P. yeei FDAARGOS_252 | ||||
| 1 | chr (GIPye2) | 00015 | Peptide-methionine (S)-S-oxide reductase (MsrA1) | ATQ55559 [179/179(100%)] | – |
| 00016 | Peptide-methionine (R)-S-oxide reductase (MsrB) | ATQ55560 [147/147(100%)] | ARC36051 [55/116(55%)] | ||
| 00019 | Peptide-methionine (S)-S-oxide reductase (MsrA2) | ATQ57572 [176/177(99%)] | – | ||
| 2 | chr (GIPye2) | 00072 | Diguanylate cyclase | ATQ55604 [617/617(100%)] | – |
| 3 | chr | 00730 | Superoxide dismutase | ATQ56160 [220/229(96%)] | ARC37539 [218/229(95%)] |
| 4 | chr | 00902 | Sugar transferase | ATQ56312 [236/238(99%)] | ARC37638 [236/238(99%)] |
| 5 | pYEE2 | 04123 | Urease subunit alpha (UreA) | ATQ58125 [565/567(99%)] | ARC34985 [562/567(99%)] |
| 04124 | Urease subunit beta (UreB) | ATQ58124 [101/101(100%)] | ARC34984 [101/101(100%)] | ||
| 04125 | Urease subunit gamma (UreC) | ATQ58123 [99/100(99%)] | ARC34983 [100/100(100%)] | ||
| 04126 | Urease accessory protein UreD | ATQ58122 [292/300(97%)] | a | ||
| 04127 | Urease accessory protein UreE | ATQ58121 [163/169(96%)] | ARC34982 [165/169(98%)] | ||
| 04128 | Urease accessory protein UreG | ATQ58120 [216/216(100%)] | ARC34981 [216/216(100%)] | ||
| 04129 | Urease accessory protein UreF | ATQ58119 [225/231(97%)] | ARC34980 [225/231(97%)] | ||
| 6 | pYEE5 | 04667 | VirD4-like T4SS protein | – | ARC38902 [660/675(98%)] |
| 04668 | VirB11-like T4SS protein | – | ARC38903 [321/329(98%)] | ||
| 04669 | VirB10-like T4SS protein | – | ARC38904 [411/433(95%)] | ||
| 04670 | VirB9-like T4SS protein | – | ARC38905 [231/236(98%)] | ||
| 04671 | VirB8-like T4SS protein | – | ARC38906 [225/225(100%)] | ||
| 04672 | VirB6-like T4SS protein | – | ARC38907 [348/348(100%)] | ||
| 04674 | VirB5-like T4SS protein | – | ARC38909 [259/259(100%)] | ||
| 04675 | Lytic murein transglycosylase | – | ARC38910 [373/377(99%)] | ||
| 04677 | VirB4-like T4SS protein | – | ARC38911 [781/784(99%)] | ||
| 04678 | VirB3-like T4SS protein | – | ARC38912 [203/225(90%)] | ||
| 04679 | VirB2-like T4SS protein | – | b | ||
| 04680 | Lytic murein transglycosylase | – | ARC38942 [134/137(98%)] | ||
aThe gene for a homolog of the CCUG 32053 and TT13 UreD proteins is frameshifted in the FDAARGOS_252 genome. bThe gene for a homolog of the CCUG 32053 VirB2-like protein is present but not annotated in the FDAARGOS_252 genome. The numbers given in the first column refer to the position of the genes for the listed proteins in the CCUG 32053 genome, as shown in Figure 1A. GenBank accession numbers and level of identity are given for the closest homologs of the predicted virulence determinants encoded in the two other complete genomes of P. yeei.