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. 2018 Oct 30;84(22):e01091-18. doi: 10.1128/AEM.01091-18

TABLE 2.

Oligonucleotide primersa used in this study

Primer Gene Nucleotide sequence
Quantitative RT-PCR
    CYP505D1-f CYP505D1 5′-CAAGTCCATTTGGGACGACT-3′
    CYP505D1-r 5′-ACGAGACCAGGAGATGGAGA-3′
    CYP505D2-f CYP505D2 5′-ATGGAGAAGGCCAAGAACCT-3′
    CYP505D2-r 5′-AGGAGGATGGACATGACGAC-3′
    CYP505D3-f CYP505D3 5′-ATGGAGAAGGCCAAGAACCT-3′
    CYP505D3-r 5′-AGGAGGATGGACATGACGAC-3′
    CYP505D4-f CYP505D4 5′-ATGGAGAAGGCCAAGAACCT-3′
    CYP505D4-r 5′-AGGAGGATGGACATGACGAC-3′
    CYP505D5-f CYP505D5 5′-ATGGAGAAGGCCAAGAACCT-3′
    CYP505D5-r 5′-AGGAGGATGGACATGACGAC-3′
    CYP505D6-f CYP505D6 5′-CAGCTCCTCAAGTCCTACGG-3′
    CYP505D6-r 5′-TCCTTCACAAGCTCCTCGAT-3′
    CYP505D7-f CYP505D7 5′-CATGGTCTGTGGTGTTGAGC-3′
    CYP505D7-r 5′-CGAAGTTGTCGTCCTCCTTC-3′
    ACT1-f ACT1 5′-CCAAGGCTAACCGTGAGAAG-3′
    ACT1-r 5′-CACCAGAGTCGAGCACGATA-3′
Cloning for recombinant protein production
    CYP505D6-f CYP505D6 5′-ATGACGTCTACCATTCCGACGCCGCCGTCCAT-3′
    CYP505D6-r 5′-CTATTCGAAGATATCGGTAGCGAA-3′
    CYP102A1-f CYP102A1 5′-ATGACAATTAAAGAAATGCCTCAGCCAAAAAC-3′
    CYP102A1-r 5′-TTACCCAGCCCACACGTCTTTTGC-3′
Site-directed mutagenesis
    CYP505D6 V51Y-f CYP505D6 5′-TACGTCAGCTCGGCGAAGCTCAT-3′
    CYP505D6 V51Y-r 5′-GAGCAGCTTCCTCCCGAGAA-3′
    CYP102A1 Y51V-f CYP102A1 5′-GTCTTATCAAGTCAGCGTCTAAT-3′
    CYP102A1 Y51V-r 5′-GCGCGTTACACGACCAGGCG-3′
a

Gene-specific primers were designed based on genomic sequence data (http://genome.jgi.doe.gov/Phchr2/Phchr2.home.html).