TABLE 2.
Primer | Gene | Nucleotide sequence |
---|---|---|
Quantitative RT-PCR | ||
CYP505D1-f | CYP505D1 | 5′-CAAGTCCATTTGGGACGACT-3′ |
CYP505D1-r | 5′-ACGAGACCAGGAGATGGAGA-3′ | |
CYP505D2-f | CYP505D2 | 5′-ATGGAGAAGGCCAAGAACCT-3′ |
CYP505D2-r | 5′-AGGAGGATGGACATGACGAC-3′ | |
CYP505D3-f | CYP505D3 | 5′-ATGGAGAAGGCCAAGAACCT-3′ |
CYP505D3-r | 5′-AGGAGGATGGACATGACGAC-3′ | |
CYP505D4-f | CYP505D4 | 5′-ATGGAGAAGGCCAAGAACCT-3′ |
CYP505D4-r | 5′-AGGAGGATGGACATGACGAC-3′ | |
CYP505D5-f | CYP505D5 | 5′-ATGGAGAAGGCCAAGAACCT-3′ |
CYP505D5-r | 5′-AGGAGGATGGACATGACGAC-3′ | |
CYP505D6-f | CYP505D6 | 5′-CAGCTCCTCAAGTCCTACGG-3′ |
CYP505D6-r | 5′-TCCTTCACAAGCTCCTCGAT-3′ | |
CYP505D7-f | CYP505D7 | 5′-CATGGTCTGTGGTGTTGAGC-3′ |
CYP505D7-r | 5′-CGAAGTTGTCGTCCTCCTTC-3′ | |
ACT1-f | ACT1 | 5′-CCAAGGCTAACCGTGAGAAG-3′ |
ACT1-r | 5′-CACCAGAGTCGAGCACGATA-3′ | |
Cloning for recombinant protein production | ||
CYP505D6-f | CYP505D6 | 5′-ATGACGTCTACCATTCCGACGCCGCCGTCCAT-3′ |
CYP505D6-r | 5′-CTATTCGAAGATATCGGTAGCGAA-3′ | |
CYP102A1-f | CYP102A1 | 5′-ATGACAATTAAAGAAATGCCTCAGCCAAAAAC-3′ |
CYP102A1-r | 5′-TTACCCAGCCCACACGTCTTTTGC-3′ | |
Site-directed mutagenesis | ||
CYP505D6 V51Y-f | CYP505D6 | 5′-TACGTCAGCTCGGCGAAGCTCAT-3′ |
CYP505D6 V51Y-r | 5′-GAGCAGCTTCCTCCCGAGAA-3′ | |
CYP102A1 Y51V-f | CYP102A1 | 5′-GTCTTATCAAGTCAGCGTCTAAT-3′ |
CYP102A1 Y51V-r | 5′-GCGCGTTACACGACCAGGCG-3′ |
Gene-specific primers were designed based on genomic sequence data (http://genome.jgi.doe.gov/Phchr2/Phchr2.home.html).