Table II. Dedicated tool table.
This table lists all the tools developed by SIB. For each tool the table shows a short description followed by its reference. In addition, we report the software language that has been used and if the tool is accessed through a web interface written with Google Polymer web components.
| Name | Purpose | Ref | Web component | Language |
|---|---|---|---|---|
| GlycoMod | Predicts glycan structures from mass data | (46) | No | Perl |
| GlycoDigest | Simulates exoglycosidase digestion | (25) | Yes | Javascript |
| SwissMassAbacus | Glycopeptide mass calculator | − | Yes | Javascript |
| GlycoSiteAlign | Aligns glycosite regions depending on attached glycan | (27) | No | Python |
| PepSweetener | Predicts intact glycopeptides (peptide + glycan composition) from mass data | (42) | Yes | Javascript |
| Glycoforest | Partial de novo sequencing of glycans from MS/MS data | (60) | No | Java |
| Glynsight | Displays interactively glycan profile changes on a single protein in multiple conditions | (37) | Yes | Javascript |