Table 1.
List of the 56 probiotic and human-gut strains of bifidobacteria (PHBifs) used for the analyses.
| Assembly | Organism/Name | Strain | Isolation Source | Probiotic Potential [Reference] |
|---|---|---|---|---|
| GCA_000695895.1 | B. animalis RH | RH | Feces * | Yes [20] |
| GCA_000260715.1 | B. animalis subsp. animalis ATCC 25527 | ATCC 25527 | Sewage | Yes [21] |
| GCA_000021425.1 | B. animalis subsp. lactis AD011 | AD011 | Infant fecal sample * | Yes [3] |
| GCA_000022965.1 | B. animalis subsp. lactis DSM 10140 | DSM 10140 | Commercially available probiotic strain | Yes [3] |
| GCA_000224965.2 | B. animalis subsp. lactis BLC1 | BLC1 | Commercially available probiotic strain | Yes [3] |
| GCA_000277325.1 | B. animalis subsp. lactis B420 | B420 | Commercially available probiotic strain | Yes [22] |
| GCA_000414215.1 | B. animalis subsp. lactis Bl12 | Bl12 | Colonoscopic sample * | No |
| GCA_000818055.1 | B. animalis subsp. lactis BF052 | BF052 | Feces of breast-fed infant * | Yes [23] |
| GCA_000022705.1 | B. animalis subsp. lactis Bl-04 | Bl-04; ATCC SD5219 | Fecal sample from a healthy adult * | Yes [3] |
| GCA_000277345.1 | B. animalis subsp. lactis Bi-07 | Bi-07 | Commercially available probiotic strain | Yes [22] |
| GCA_000025245.1 | B. animalis subsp. lactis BB-12 | BB-12 | Commercially available probiotic strain | Yes [3] |
| GCA_000220885.1 | B. animalis subsp. lactis CNCM I-2494 | CNCM I-2494 | Commercially available probiotic strain | Yes [24] |
| GCA_000092765.1 | B. animalis subsp. lactis V9 | V9 | Feces of healthy Mongolian infants * | Yes [3] |
| GCA_000816205.1 | B. animalis subsp. lactis KLDS2.0603 | KLDS2.0603 | Adult feces * | Yes [25] |
| GCA_000817045.1 | B. animalis A6 | A6 | Feces * | Yes [26] |
| GCA_001025155.1 | B. angulatum DSM 20098 = JCM 7096 | JCM 7096 | Human feces * | Yes [27] |
| GCA_000966445.2 | B. angulatum GT102 | GT102 | Feces * | No |
| GCA_001025195.1 | B. catenulatum DSM 16992 = JCM 1194 = LMG 11043 | JCM 1194 | Human feces * | Yes [3] |
| GCA_000010425.1 | B. adolescentis ATCC 15703 | ATCC 15703 | Human adult intestine * | Yes [3] |
| GCA_000817995.1 | B. adolescentis BBMN23 | BBMN23 | Human feces * | Yes [28] |
| GCA_000164965.1 | B. bifidum S17 | S17 | Feces of a breast-fed infant * | Yes [3] |
| GCA_000737885.1 | B. adolescentis 22L | 22L | Milk * | Yes [29] |
| GCA_001281345.1 | B. bifidum BF3 | BF3 | Feces * | Yes [30] |
| GCA_001025135.1 | B. bifidum ATCC 29521 = JCM 1255 = DSM 20456 | JCM 1255 | Stool of breast-fed infant * | Yes [31] |
| GCA_000165905.1 | B. bifidum PRL2010 | PRL2010 | Infant stool samples * | Yes [3] |
| GCA_000265095.1 | B. bifidum BGN4 | BGN4 | Human feces * | Yes [32] |
| GCA_000568955.1 | B. breve 12L | 12L | Human milk * | No |
| GCA_000007525.1 | B. longum NCC2705 | NCC2705 | Infant feces * | Yes [3] |
| GCA_001719085.1 | B. longum 35624 | 35624 | Ileal mucosa of an individual free of gastrointestinal disease * | Yes [33] |
| GCA_000166315.1 | B. longum subsp. longum BBMN68 | BBMN68 | Long-lived man’s intestinal tract * | Yes [3] |
| GCA_001025175.1 | B. breve DSM 20213 = JCM 1192 | JCM 1192 | Infant feces * | Yes [3] |
| GCA_000568975.1 | B. breve JCM 7017 | JCM 7017 | Infant feces * | No |
| GCA_000829295.1 | B. longum 105-A | 105-A | Human feces * | Yes [34] |
| GCA_000347695.1 | B. thermophilum RBL67 | RBL67 | Baby feces * | Yes [3] |
| GCA_000569075.1 | B. breve S27 | S27 | Infant feces * | No |
| GCA_001025215.1 | B. pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 | JCM 1200 | Infant feces * | Yes [3] |
| GCA_000569035.1 | B. breve NCFB 2258 | NCFB 2258 | Infant feces * | Yes [35] |
| GCA_000569055.1 | B. breve 689b | 689b | Infant feces * | No |
| GCA_001042615.1 | B. kashiwanohense JCM 15439 = DSM 21854 | JCM 15439 | Feces of a healthy Japanese infant * | No |
| GCA_000772485.1 | B. longum subsp. longum GT15 | GT15 | The gastrointestinal tract (GIT) of a healthy adult from Central region of Russia * | Yes [36] |
| GCA_001446255.1 | B. longum subsp. longum NCIMB8809 | NCIMB8809 | Stool sample * | Yes [5] |
| GCA_000569015.1 | B. breve JCM 7019 | JCM 7019 | Adult feces * | No |
| GCA_000196555.1 | B. longum subsp. longum JCM 1217 | JCM 1217 | Intestine of adult * | Yes [3] |
| GCA_000008945.1 | B. longum DJO10A | DJO10A | Healthy young adult’s feces * | Yes [3] |
| GCA_000219455.1 | B. longum subsp. longum KACC 91563 | KACC 91563 | Feces of neonates * | Yes [3] |
| GCA_000196575.1 | B. longum subsp. infantis 157F | 157F | Human infant feces * | Yes [3] |
| GCA_001725985.1 | B. longum subsp. longum AH1206 | AH1206 | Stool sample * | Yes [37] |
| GCA_000220135.1 | B. breve UCC2003 | UCC2003 | Infant nursing stool * | Yes [3] |
| GCA_001281425.1 | B. breve BR3 | BR3 | Feces * | Yes [38] |
| GCA_001293145.1 | B. longum BG7 | BG7 | Feces * | Yes [39] |
| GCA_001446275.1 | B. longum subsp. longum CCUG30698 | CCUG30698 | Human adult intestine * | No |
| GCA_000092325.1 | B. longum subsp. longum JDM301 | JDM301 | Human infant feces * | Yes [3] |
| GCA_000730205.1 | B. longum BXY01 | BXY01 | Gut * | No |
| GCA_001281305.1 | B. longum subsp. Infantis BT1 | BT1 | Feces * | No |
| GCA_000269965.1 | B. longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | JCM 1222 | Intestine of infant * | Yes [40] |
| GCA_000020425.1 | B. longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | ATCC 15697 | Human infant feces * | Yes [40] |
* Represents that isolation source belongs to the human host.