Table 1.
Terms | D0 | D2 | D4 | D8 |
---|---|---|---|---|
Raw reads number | 189,475,072 | 165,990,894 | 201,125,216 | 139,876,842 |
Clean reads number | 155,981,654 | 137,762,268 | 168,562,368 | 119,115,476 |
Clean reads rate, % | 82.32 | 82.99 | 83.81 | 85.16 |
Clean Q30 bases rate, % | 94.99 | 94.80 | 94.81 | 95.35 |
Mapped reads | 152,068,735 | 134,451,565 | 164,621,381 | 116,588,244 |
(155,834,560) | (137,634,429) | (168,443,435) | (119,037,090) | |
Mapping rate, % | 97.49 | 97.60 | 97.66 | 97.88 |
(99.91) | (99.91) | (99.93) | (99.93) |
The values outside the brackets represent the reads and proportion that were compared to those in the pig reference genome (Sus scrofa 11.1) using the HiSAT2 program, while the values inside the brackets represent the reads and proportion that were compared to those in the pig reference genome (Sus scrofa 11.1) using the BWA-MEM algorithm