Table 1. Model’s F1-measure and running time.
Dataset |
F1-measure | Number of isolates | Time for the model building (per model) | Time for the phenotype prediction (per phenotype) |
|
---|---|---|---|---|---|
Training | Testing | ||||
Pseudomonas aeruginosa (contigs) | 0.88 | 150 | 50 | 3h 36m | 0.81s |
Pseudomonas aeruginosa (reads) | 0.88 | 150 | 50 | 19h 56m | 58.0s |
Klebsiella pneumoniae (contigs) | 0.88 | 125 | 42 | 3h 38m | 0.7s |
Klebsiella pneumoniae (reads) | 0.88 | 125 | 42 | 10h 3m | 28.0s |
Clostridium difficile (contigs) | 0.97 | 345 | 115 | 4h 50m | 0.61s |
Pseudomonas aeruginosa (contigs) | 0.88 | 150 | 50 | 3h 36m | 0.81s |