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. Author manuscript; available in PMC: 2018 Nov 1.
Published in final edited form as: Pac Symp Biocomput. 2018;23:20–31.

Table 1.

Performance for all types of cross validation and for the three protein feature sets.

All Prosite Pfam Short Prosite
auROC, random holdout (Train/Test) 0.96/0.95 0.95/0.93 0.94/0.93
auPRC, random holdout (Train/Test) 0.45/0.42 0.42/0.41 0.31/0.30
auROC, ligand holdout (Train/Test) 0.96/0.93 0.92/0.82 0.97/0.93
auPRC, ligand holdout (Train/Test) 0.46/0.32 0.38/0.19 0.39/0.31
auROC, protein holdout (Train/Test) 0.98/0.84 0.93/0.84 0.97/0.85
auPRC, protein holdout (Train/Test) 0.54/0.23 0.40/0.20 0.38/0.27
auROC, quadrant holdout (Train/Test) 0.96/0.95 0.91/0.86 0.97/0.95
auPRC, quadrant holdout (Train/Test) 0.45/0.34 0.36/0.29 0.38/0.34