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. 2018 Oct 26;9:2551. doi: 10.3389/fmicb.2018.02551

Table 5.

The performance of SVM based models developed using binary profile of atoms obtained from terminals of SMILES format.

Feature (parameters) Main dataset
Validation dataset
Sen Spc Acc MCC AUROC Sen Spc Acc MCC AUROC
N25 (g = 0.05, c = 8, j = 2) 77.63 75.68 76.67 0.53 0.83 79.59 85.71 82.42 0.65 0.91
N50 (g = 0.01, c = 3, j = 3) 83.17 79.31 81.27 0.63 0.88 90.58 86.40 88.59 0.77 0.93
N100 (g = 0.005, c = 6, j = 2) 85.71 84.18 84.90 0.70 0.93 85.04 84.93 84.98 0.70 0.93
C25 (g = 0.01, c = 5, j = 4) 79.11 70.43 74.70 0.50 0.79 89.19 74.51 82.16 0.65 0.83
C50 (g = 0.1, c = 1, j = 1) 83.47 72.08 77.94 0.56 0.85 88.31 74.83 81.73 0.64 0.91
C100 (g = 0.001, c = 3, j = 2) 82.97 81.85 82.38 0.65 0.89 89.55 77.55 83.27 0.67 0.92
N25C25 (g = 0.01, c = 5, j = 2) 85.69 84.82 85.27 0.71 0.91 84.71 82.31 83.55 0.67 0.92
N50C50 (g = 0.05, c = 2, j = 1) 89.79 87.16 88.47 0.77 0.95 87.43 85.63 86.53 0.73 0.95
N100C100 (g = 0.01, c = 6, j = 1) 90.15 89.58 89.84 0.80 0.96 90.51 84.62 87.37 0.75 0.96

Sen, Sensitivity; Spc, Specificity; Acc, Accuracy; MCC, Matthew’s Correlation Coefficient; AUROC, Area Under the Receiver Operating Characteristic curve; N25/N50/N100, first 25/50/100 elements from N-terminal; C25/C50/C100, first 25/50/100 elements from C-terminal; N25C25/N50C50/N100C100, first 25/50/100 elements from N-terminal as well as from C-terminal joined together.