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. 2018 May 31;31(12):1852–1862. doi: 10.5713/ajas.18.0072

Table 5.

The summary of candidate genes overlap in each reproduction trait

Breeds SSC Gene1) Location (bp) Traits
LR 2 LRRC4C 20,417,294 – 21,634,205 PWL and BAL
2 SLCO4C1 107,817,177–107,887,399 W2C, LSY, and NPD
2 SLCO6A1 107,922,002–108,020,311 W2C, LSY, PWSY, and NPD
2 ZNF474 125,663,425–125,719,312 BAL
6 RBP7 70,313,309–70,326,455 PWL, BAL, W2CL, and PWSY
6 UBE4B 70,345,801–70,462,430 PWL, BAL, W2CL, and PWSY
6 ZMYND12 168,876,871–168,902,812 BAL
6 RIMKLA 168,919,762–168,950,094 BAL
14 NEFL 8,990,750–8,997,300 PWL
X CLCN4 6,977,164–7,017,734 W2C, LSY, and NPD
X MID1 7,235,386–7,906,049 W2C, LSY, and NPD
LW 1 ALDH1A3 139,450,945–139,492,015 Six traits
1 LRRK1 139,494,121–139,624,607 Six traits
18 EPHB6 7,346,793–7,419,859 LSY and NPD
X MID1 7,235,386–7,906,049 NPD
X RTL4 91,920,451–92,333,326 PWL, BAL, LSY, PWSY, and NPD
X TRPC5 91,724,620–91,880,064 PWL, BAL, LSY, PWSY, and NPD
X LHFPL1 92,418,941–92,486,688 PWL, BAL, LSY, PWSY, and NPD
X SLITRK2 118,826,442–118,834,950 BAL and W2CL
X FGF13 113,460,191–113,955,691 W2CL

SSC, the position of SNP on Sus scrofa chromosome; LR, Landrace; LRRC4C, leucine rich repeat containing 4C; PWL, pigs weaned per litters; BAL, born alive per litters; SLCO4C1, solute carrier organic anion transporter family member 4C1; W2CL, wean to conception interval per litters; LSY, litter per sow per year; PWSY, pig weaned per sow per year; NPD, non-productive day; ZNF474, zinc finger protein 474; RBP7, retinol binding protein 7; UBE4B, ubiquitination factor E4B; ZMYND12, zinc finger MYND-type containing 12; RIMKLA, ribosomal modification protein rimK like family member A; NEFL, neurofilament light; CLCN4, chloride voltage-gated channel 4; MID1, midline-1; LW, Large White; ALDH1A3, aldehyde dehydrogenase 1 family member A3; LRRK1, leucine rich repeat kinase 1; EPHB6, EPH receptor B6; RTL4, retrotransposon Gag like 4; TRPC5, transient receptor potential cation channel subfamily C member 5; LHFPL1, LHFPL tetraspan subfamily member 1; SLITRK2, SLIT and NTRK like family member 2; FGF13, fibroblast growth factor 13.

1)

Gene locations on the Sus scrofa Build 11.1 assembly. Gene names represent on Ensembl (http://asia.ensembl.org/Sus_scrofa/Info/Index).