Table 5.
Breeds | SSC | Gene1) | Location (bp) | Traits |
---|---|---|---|---|
LR | 2 | LRRC4C | 20,417,294 – 21,634,205 | PWL and BAL |
2 | SLCO4C1 | 107,817,177–107,887,399 | W2C, LSY, and NPD | |
2 | SLCO6A1 | 107,922,002–108,020,311 | W2C, LSY, PWSY, and NPD | |
2 | ZNF474 | 125,663,425–125,719,312 | BAL | |
6 | RBP7 | 70,313,309–70,326,455 | PWL, BAL, W2CL, and PWSY | |
6 | UBE4B | 70,345,801–70,462,430 | PWL, BAL, W2CL, and PWSY | |
6 | ZMYND12 | 168,876,871–168,902,812 | BAL | |
6 | RIMKLA | 168,919,762–168,950,094 | BAL | |
14 | NEFL | 8,990,750–8,997,300 | PWL | |
X | CLCN4 | 6,977,164–7,017,734 | W2C, LSY, and NPD | |
X | MID1 | 7,235,386–7,906,049 | W2C, LSY, and NPD | |
LW | 1 | ALDH1A3 | 139,450,945–139,492,015 | Six traits |
1 | LRRK1 | 139,494,121–139,624,607 | Six traits | |
18 | EPHB6 | 7,346,793–7,419,859 | LSY and NPD | |
X | MID1 | 7,235,386–7,906,049 | NPD | |
X | RTL4 | 91,920,451–92,333,326 | PWL, BAL, LSY, PWSY, and NPD | |
X | TRPC5 | 91,724,620–91,880,064 | PWL, BAL, LSY, PWSY, and NPD | |
X | LHFPL1 | 92,418,941–92,486,688 | PWL, BAL, LSY, PWSY, and NPD | |
X | SLITRK2 | 118,826,442–118,834,950 | BAL and W2CL | |
X | FGF13 | 113,460,191–113,955,691 | W2CL |
SSC, the position of SNP on Sus scrofa chromosome; LR, Landrace; LRRC4C, leucine rich repeat containing 4C; PWL, pigs weaned per litters; BAL, born alive per litters; SLCO4C1, solute carrier organic anion transporter family member 4C1; W2CL, wean to conception interval per litters; LSY, litter per sow per year; PWSY, pig weaned per sow per year; NPD, non-productive day; ZNF474, zinc finger protein 474; RBP7, retinol binding protein 7; UBE4B, ubiquitination factor E4B; ZMYND12, zinc finger MYND-type containing 12; RIMKLA, ribosomal modification protein rimK like family member A; NEFL, neurofilament light; CLCN4, chloride voltage-gated channel 4; MID1, midline-1; LW, Large White; ALDH1A3, aldehyde dehydrogenase 1 family member A3; LRRK1, leucine rich repeat kinase 1; EPHB6, EPH receptor B6; RTL4, retrotransposon Gag like 4; TRPC5, transient receptor potential cation channel subfamily C member 5; LHFPL1, LHFPL tetraspan subfamily member 1; SLITRK2, SLIT and NTRK like family member 2; FGF13, fibroblast growth factor 13.
Gene locations on the Sus scrofa Build 11.1 assembly. Gene names represent on Ensembl (http://asia.ensembl.org/Sus_scrofa/Info/Index).