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. 2018 Sep 20;46(19):9960–9970. doi: 10.1093/nar/gky833

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© The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 8. — Schematic interaction map summarizing the major non-Watson–Crick hydrogen bonds and stacking interactions between selected bases and 6′ group of aminoglycosides in (A) the free riboswitch, (B) complex with NEO, (C) complex with PAR. The width of red and blue lines indicates the percentage of simulation frames in which these interactions were present. For clarity, the interactions observed in <10% of frames and the stable stacking between G5 and G9 in all simulations are omitted. High Na⁺ density and uridine shift are symbolically marked in relevant panels.