Table 3.
Gene ontology (GO) functional enrichment analysis of differentially expressed genes in CBCVd infected hop.
| GO ID | Ontology | Category | Number of DEGs | Number of Unigenes in Subgroup | FDR | p-value |
|---|---|---|---|---|---|---|
| GO:0008152 | metabolic process | P | 1008 | 10,614 | 7.10 × 10−92 | 2.20 × 10−94 |
| GO:0044238 | primary metabolic process | P | 816 | 8995 | 9.20 × 10−59 | 5.60 × 10−61 |
| GO:0005975 | carbohydrate metabolic process | P | 199 | 866 | 5.00 × 10−58 | 4.60 × 10−60 |
| GO:0009987 | cellular process | P | 949 | 11,684 | 2.70 × 10−50 | 3.30 × 10−52 |
| GO:0019538 | protein metabolic process | P | 388 | 4009 | 3.80 × 10−28 | 5.80 × 10−30 |
| GO:0006464 | protein modification process | P | 193 | 1474 | 3.70 × 10−26 | 6.70 × 10−28 |
| GO:0006629 | lipid metabolic process | P | 135 | 841 | 3.40 × 10−25 | 7.30 × 10−27 |
| GO:0009058 | biosynthetic process | P | 435 | 5118 | 2.50 × 10−21 | 6.80 × 10−23 |
| GO:0009056 | catabolic process | P | 159 | 1307 | 1.00 × 10−18 | 3.10 × 10−20 |
| GO:0015979 | photosynthesis | P | 34 | 162 | 5.80 × 10−9 | 2.30 × 10−10 |
| GO:0006810 | transport | P | 136 | 1846 | 0.0025 | 0.00012 |
| GO:0051179 | localization | P | 136 | 1922 | 9.90 × 10−3 | 0.00058 |
| GO:0019725 | cellular homeostasis | P | 21 | 174 | 1.30 × 10−2 | 0.00082 |
| GO:0009605 | response to external stimulus | P | 39 | 429 | 2.20 × 10−2 | 0.0014 |
| GO:0003824 | catalytic activity | F | 1145 | 9638 | 3.60 × 10−18 | 4.10 × 10−189 |
| GO:0016740 | transferase activity | F | 360 | 3321 | 6.90 × 10−35 | 1.60 × 10−36 |
| GO:0016787 | hydrolase activity | F | 370 | 3468 | 8.10 × 10−35 | 2.80 × 10−36 |
| GO:0005488 | binding | F | 859 | 11,258 | 1.50 × 10−33 | 8.60 × 10−35 |
| GO:0016301 | kinase activity | F | 140 | 1641 | 1.20 × 10−06 | 8.50 × 10−8 |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | F | 140 | 1887 | 7.70 × 10−4 | 7.10 × 10−5 |
| GO:0005215 | transporter activity | F | 108 | 1477 | 7.10 × 10−3 | 0.00075 |
| GO:0008135 | translation factor activity, nucleic acid binding | F | 21 | 181 | 1.10 × 10−2 | 0.0013 |
| GO:0005198 | structural molecule activity | F | 54 | 659 | 1.40 × 10−2 | 0.0018 |
| GO:0016020 | membrane | C | 426 | 4068 | 2.80 × 10−38 | 1.60 × 10−40 |
| GO:0005737 | cytoplasm | C | 582 | 6822 | 1.30 × 10−30 | 2.10 × 10−32 |
| GO:0005623 | cell | C | 1015 | 15,217 | 7.40 × 10−20 | 2.90 × 10−21 |
| GO:0043226 | organelle | C | 594 | 8155 | 5.60 × 10−16 | 3.20 × 10−17 |
| GO:0005840 | ribosome | C | 79 | 524 | 1.10 × 10−13 | 6.80 × 10−15 |
| GO:0009536 | plastid | C | 227 | 2965 | 3.20 × 10−7 | 3.80 × 10−8 |
| GO:0005618 | cell wall | C | 49 | 403 | 3.00 × 10−6 | 3.80 × 10−7 |
| GO:0005829 | cytosol | C | 84 | 912 | 1.80 × 10−5 | 2.50 × 10−6 |
| GO:0005886 | plasma membrane | C | 100 | 1456 | 0.041 | 0.0064 |