Table 1.

Throughput and quality of RNA-seq of differentially expressed genes (DGEs) libraries from “Granny Smith” apple skins.

Sample	Clean Reads	Mapped Reads (%)	Uniquely Mapped Reads (%)	Expressed Genes
CK1-1	290,141,72	72.19	63.60	31713
CK1-2	250,432,60	70.62	62.39	29085
CK2-1	328,395,82	55.89	50.16	23434
CK2-2	295,493,66	64.48	57.98	26639
T1-1	238,889,26	70.18	61.79	30322
T1-2	270,839,02	71.39	62.91	31195
T2-1	319,614,16	72.05	64.33	30597
T2-2	315,852,92	71.33	63.55	30470

CK, control; T, 5-aza-2′-deoxycytidine treatment; 1-, 0 day after exposure of treated fruits to light; and 2-, 15 days after exposure of treated fruits to light; -1 and -2 represent replication 1 and 2, respectively.