CagA	Cytotoxin-associated gen A
Cag PAI	CagA pathogenic island
c-Abl	Mammalian Abelson murine leukemia viral oncogene
CHARMM	Chemistry at Harvard Macromolecular Mechanics
CM	Multimerization sequence
c-Met	Tyrosine-protein kinase Met
FACTS	Fast Analytical Continuum Treatment of Solvation
LMM	Linear Mixed Model
MALT	Mucosa-associated lymphoid tissue
MARK	Microtubule affinity-regulating kinase
MSA	Multiple Sequence Alignment
NCBI	The National Center for Biotechnology Information
NF$\kappa$B	Nuclear factor $\kappa$B
PAR1	Protease-activated receptor 1
PDB	Protein Databank
PS	Phosphatidylserine
Src	Proto-oncogene tyrosine-protein kinase
TCF	Transcription factor
T4SS	Type IV secretion system