REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited Data
NA12878 WGS (10x)	10x Genomics	https://support.10xgenomics.com/genome-exome/datasets/2.1.0/NA12878_WGS_210
NA12878 WGS v2 (10x)	10x Genomics	https://support.10xgenomics.com/genome-exome/datasets/2.2.1/NA12878_WGS_v2
NA12878 WGS (Illumina TruSeq Synthetic Long-Read)	Bishara et al. (2015)	BioProject: PRJNA287848
NA12878 WGS (CPT-seq)	Amini et al. (2014)	BioProject: PRJNA241346
Software and Algorithms
Long Ranger	10x Genomics	https://support.10xgenomics.com/genome-exome/software/downloads/latest
BWA	Li and Durbin (2009)	https://github.com/lh3/bwa
GATK	Broad Institute	https://software.broadinstitute.org/gatk/
HapCUT2	Edge etal. (2016)	https://github.com/vibansal/HapCUT2
Picard	Broad Institute	https://broadinstitute.github.io/picard/
Samtools	Li et al. (2009)	https://github.com/samtools/samtools
RTG Tools	Cleary et al. (2014)	https://github.com/RealTimeGenomics/rtg-tools
EMA	This paper	https://github.com/arshajii/ema
Other
NISTGIAB	Zook etal. (2016)	http://jimb.stanford.edu/giab/
NA24149, NA24143 and NA24385 WGS (10x)	Broad Institute	http://ema.csail.mit.edu