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. 2018 Nov 2;13(11):e0203376. doi: 10.1371/journal.pone.0203376

Table 4. Genotype and allele frequencies of TLR6 SNPs in Saudi BC cases versus controls based on age of diagnostic.

SNP ID Genotype Cases Controls OR (95% CI) χ2 Value P*- Value
patient’s age ≤ 48 years
rs3796508 n = 44 n = 56
Val/Val 40(0.91) 55(0.98) Ref
Val/Met 4(0.09) 1(0.02) 5.500 0.592–51.090 2.77 0.09615
Met/Met 0(0.00) 0(0.00) 1.370 0.027–70.519 1
Val/Met +Met/Met 4(0.09) 1(0.02) 5.500 0.592–51.090 2.77 09615
Val 84(0.95) 111(0.99) Ref
Met 4(0.05) 1(0.01) 5.286 0.580–48.162 2.70 0.18404
rs5743810 n = 45 n = 55
Ser/Ser 0(0.00) 0(0.00) Ref
Ser/Pro 14(0.31) 2(0.04) 5.800 0.092–365.479 1
Pro/Pro 31(0.69) 53(0.96) 0.589 0.011–30.413 1
Ser/Pro+Pro/Pro 45(1) 55(1) 0.820 0.016–42.132 1
Ser 14(0.16) 2(0.02) Ref
Pro 76(0.84) 108(0.98) 0.101 0.022–0.455 12.69 0.00037*
SNP ID Genotype Cases Controls OR (95% CI) χ2 Value P*- Value
patient’s age > 48 years
rs3796508 n = 81 n = 54
Val/Val 77 (0.95) 47 (0.87) Ref
Val/Met 4 (0.05) 6 (0.11) 0.407 0.109–1.517 1.89 0.16922
Met/Met 0 (0.00) 1 (0.02) 0.204 0.008–5.118 1.62 0.20350
Val/Met +Met/Met 4 (0.05) 7 (0.13) 0.349 0.097–1.256 2.79 0.09499
Val 158 (0.98) 100 (0.93) Ref
Met 4 (0.02) 8 (0.07) 0.316 0.093–1.078 3.72 0.07084
rs5743810 n = 82 n = 55
Ser/Ser 0 (0.00) 0 (0.00) Ref
Ser/Pro 22 (0.27) 2 (0.04) 9.000 0.144–560.703 1
Pro/Pro 60 (0.73) 53 (0.96) 1.131 0.022–57.981 1
Ser/Pro+Pro/Pro 82 (1) 55 (1) 1.486 0.029–76.027 1
Ser 22 (0.13) 2 (0.02) Ref
Pro 142 (0.87) 108 (0.98) 0.120 0.028–0.519 11.08 0.00087*

* = P<0.05, Ref = Reference allele