Table 4. Genotype and allele frequencies of TLR6 SNPs in Saudi BC cases versus controls based on age of diagnostic.
SNP ID | Genotype | Cases | Controls | OR | (95% CI) | χ2 Value | P*- Value |
---|---|---|---|---|---|---|---|
patient’s age ≤ 48 years | |||||||
rs3796508 | n = 44 | n = 56 | |||||
Val/Val | 40(0.91) | 55(0.98) | Ref | ||||
Val/Met | 4(0.09) | 1(0.02) | 5.500 | 0.592–51.090 | 2.77 | 0.09615 | |
Met/Met | 0(0.00) | 0(0.00) | 1.370 | 0.027–70.519 | — | 1 | |
Val/Met +Met/Met | 4(0.09) | 1(0.02) | 5.500 | 0.592–51.090 | 2.77 | 09615 | |
Val | 84(0.95) | 111(0.99) | Ref | ||||
Met | 4(0.05) | 1(0.01) | 5.286 | 0.580–48.162 | 2.70 | 0.18404 | |
rs5743810 | n = 45 | n = 55 | |||||
Ser/Ser | 0(0.00) | 0(0.00) | Ref | ||||
Ser/Pro | 14(0.31) | 2(0.04) | 5.800 | 0.092–365.479 | — | 1 | |
Pro/Pro | 31(0.69) | 53(0.96) | 0.589 | 0.011–30.413 | — | 1 | |
Ser/Pro+Pro/Pro | 45(1) | 55(1) | 0.820 | 0.016–42.132 | — | 1 | |
Ser | 14(0.16) | 2(0.02) | Ref | ||||
Pro | 76(0.84) | 108(0.98) | 0.101 | 0.022–0.455 | 12.69 | 0.00037* | |
SNP ID | Genotype | Cases | Controls | OR | (95% CI) | χ2 Value | P*- Value |
patient’s age > 48 years | |||||||
rs3796508 | n = 81 | n = 54 | |||||
Val/Val | 77 (0.95) | 47 (0.87) | Ref | ||||
Val/Met | 4 (0.05) | 6 (0.11) | 0.407 | 0.109–1.517 | 1.89 | 0.16922 | |
Met/Met | 0 (0.00) | 1 (0.02) | 0.204 | 0.008–5.118 | 1.62 | 0.20350 | |
Val/Met +Met/Met | 4 (0.05) | 7 (0.13) | 0.349 | 0.097–1.256 | 2.79 | 0.09499 | |
Val | 158 (0.98) | 100 (0.93) | Ref | ||||
Met | 4 (0.02) | 8 (0.07) | 0.316 | 0.093–1.078 | 3.72 | 0.07084 | |
rs5743810 | n = 82 | n = 55 | |||||
Ser/Ser | 0 (0.00) | 0 (0.00) | Ref | ||||
Ser/Pro | 22 (0.27) | 2 (0.04) | 9.000 | 0.144–560.703 | — | 1 | |
Pro/Pro | 60 (0.73) | 53 (0.96) | 1.131 | 0.022–57.981 | — | 1 | |
Ser/Pro+Pro/Pro | 82 (1) | 55 (1) | 1.486 | 0.029–76.027 | — | 1 | |
Ser | 22 (0.13) | 2 (0.02) | Ref | ||||
Pro | 142 (0.87) | 108 (0.98) | 0.120 | 0.028–0.519 | 11.08 | 0.00087* |
* = P<0.05, Ref = Reference allele