| Sample Data |
|
|
| All live-imaging data sets and SBML models |
(multiple) |
https://cellcycle.renci.org/download_all_data/ |
| Software and Algorithms |
|
|
| CCB tool software source code repo |
This paper |
https://github.com/RENCI/CellCycleBrowser/ |
| Docker |
https://www.docker.com/ |
v1.7.1 |
| Django Python web framework |
https://www.djangoproject.com/ |
v1.10 |
| Python |
https://www.python.org/ |
v2.7.11 |
| PostgreSQL database |
https://www.postg resql.org/ |
v2.6.1 |
| RabbitMQ message broker |
https://www.rabbitmq.com/ |
v1.4.9 |
| Celery distributed task queue |
http://www.celeryproject.org/ |
v3.1.23 |
| StochPy stochastic modeling in Python |
http://stochpy.sourceforge.net/ |
v2.3 |
| libSBML Python library |
http://sbml.org/Software/libSBML/docs/python-api/ |
v5.15.0 |
| Bootstrap |
http://getbootstrap.com/ |
v3.3.6 |
| jQuery |
https://jquery.com/ |
v1.12.4 |
| d3 |
https://d3js.org/ |
v4.10.0 |
| d3-contour |
https://github.com/d3/d3-contour |
v1.2.0 |
| d3-scale-chromatic |
https://github.com/d3/d3-scale-chromatic |
v1.2.0 |
| flux |
https://github.com/facebook/flux |
v3.1.3 |
| hclusterjs |
https://github.com/cmpolis/hcluster.js |
v1.3.1 |
| keymirror |
https://github.com/STRML/keyMirror |
v0.1.1 |
| object-assign |
https://github.com/sindresorhus/object-assign |
v4.1.1 |
| react react-dom |
https://facebook.github.io/react/ |
v 16.2.0 |
| prop-types |
https://github.com/facebook/prop-types |
v15.6.1 |
| science |
https://github.com/jasondavies/science.js/ |
v1.9.3 |
| seedrandom |
https://github.com/davidbau/seedrandom |
v2.4.3 |
| simple-statistics |
https://simplestatistics.org/ |
v5.2.1 |
| babel-core babel-cli |
https://github.com/babel/babel |
v6.26.0 |
| babel-loader |
https://github.com/babel/babel |
v.7.1.4 |
| babel-preset-env |
https://babeljs.io/docs/plugins/preset-env/ |
v1.6.1 |
| babel-preset-react |
https://babeljs.io/docs/plugins/preset-react/ |
v6.24.1 |
| html-webpack-plugin |
https://webpack.js.org/plugins/html-webpack-plugin/ |
v3.1.0 |
| webpack |
https://webpack.js.org/ |
v4.2.0 |
| webpack-cli |
https://webpack.js.org/api/cli/ |
v2.0.13 |
| webpack-dev-server |
https://webpack.js.org/configuration/dev-server/ |
v3.1.1 |
| Other |
|
|
| Website for CCB portal |
This paper |
https://cellcycle.renci.org |
| Tutorial for CCB tool |
This paper |
https://github.com/RENCI/CellCycleBrowser/wiki/Tutorial |
| CCB installation guide for developers |
This paper |
https://github.com/RENCI/CellCycleBrowser/blob/master/README.md |
