| ABF | Adaptive biasing force |
| COLVARS | Colective variables |
| EDTA | Ethylenediamine-tetraacetic acid |
| FES | Free energy surface |
| DTPA | Diethylene triamine pentaacetic acid |
| MM-PBSA | Molecular-mechanics Poisson–Boltzmann surface area |
| MM-GBSA | Molecular-mechanics Generalized Born surface area |
| PMF | Potential of mean force |
| RP-HPLC | Reverse phase-High-performance liquid chromatography |
| SDS-PAGE | Sodium dodecyl sulfate polyacrylamide gel electrophoresis |
| SVMPs | Snake venom metalloproteinases |
| TPEN | N, N, N’, N’-Tetrakis (2-pyridylmethyl) ethane-1,2-diamine |
| TTD | Tetraethylthiuram disulfide |