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. 2018 Sep 28;10(10):397. doi: 10.3390/toxins10100397

Table 1.

Experimentally determined inhibition constants and standard free energies compared to standard free energies calculated from simulation.

Terpene IC50 (μM) ΔG Experimental (kcal/mol) ΔG Theoretical (kcal/mol)
Betulinic acid 115±16 4.5±0.1 11.0±1.4
Ursolic acid 220±40 3.5±0.1 4.3±0.8
Oleanolic acid 360±70 3.7±0.1 6.1±0.6
Madecassic acid 540±80 ND 5.8±0.5
Betulin 1470±130 ND 1.12±0.01
β-Boswellic acid ND ND 6.6±0.5

The IC50 value of β-boswellic acid could not be determined because, at concentration of 2000 μM, 70% of Batx-I proteolytic activity was still observed. ΔG experimental was estimated from measurements of enzyme activity via the Cheng–Prusoff equation (Equation (1)). It should be noted that quantitative agreement between the experimental and theoretical ΔG values is not expected because the simulations suggest significant differences in the bound poses of the compounds, which are not captured by the Cheng–Prusoff equation, and, furthermore, the experiments were performed with Batx-I, for which no atomic structure is available; hence, the simulations used the homologous protein BaP1 [40].