Table 1.
Secretion system | Gene | Primers |
|
---|---|---|---|
Name | Sequences | ||
T3SS | pscC∗ | F pscC | 5′-ccaggcctgccttacgactat-3′ |
R pscC | 5′-tcgtagtaccagcccgaggtt-3′ | ||
exoS | R exoS | 5′-atgccggtgtagagaccaag-3′ | |
F exoS | 5′-aggtcagcagagtatcggc-3′ | ||
exoT | R exoT | 5′-tcgatcgatatctcgctgac-3′ | |
F exoT | 5′-tgaacaggtcgtgaagacc-3′ | ||
exoU | R exoU | 5′-acgtaacagagctacgttgg-3′ | |
F exoU | 5′-ttgatcatcagcagttactcg-3′ | ||
exoY | R exoY | 5′-tgccatagaatccgtcctcg-3′ | |
F exoY | 5′-atgacctcttcctggtagcg-3′ | ||
H1-T6SS | tssB1∗ | F tssB1 | 5′-gtgcagatcgagtacgacg-3′ |
R tssB1 | 5′-tcttgccgtccatgtaggt-3′ | ||
tse1 | R tse1 | 5′-agggagtagacgtagtag-3′ | |
F tse1 | 5′-aagtacccgatgtgctggtg-3′ | ||
tse2 | R tse2 | 5′-acgaagttgtccagttgg-3′ | |
F tse2 | 5′-ttaaggtgaagcaggacagc-3′ | ||
tse3 | R tse3 | 5′-ttgctgtacttggtgacgg-3′ | |
F tse3 | 5′-atccagggtccgttcag-3′ | ||
H2-T6SS | tssB2∗ | F tssB2 | 5′-atggccaaagaaggctcggt-3′ |
R tssB2 | 5′-tggtgcttggccaggacctc-3′ | ||
pldA | R pldA | 5′-tgtcgatcaccacggatttc-3′ | |
F pldA | 5′-tatgacttcgaaaccatgctcg-3′ | ||
H3-T6SS | tssB3∗ | F tssB3 | 5′-gtacgcagcacaagctggac-3′ |
R tssB3 | 5′-ttgaccgggtcgaagtcctc-3′ | ||
pldB | R pldb | 5′-ttcgatgttgttttcctggcc-3′ | |
F pldb | 5′-aagaccacctacgacatgatg-3′ |
∗genes encoded a structural protein of the secretion system (T3SS or T6SS).