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. 2018 Aug 21;210(2):719–731. doi: 10.1534/genetics.118.301336

Figure 3.

Figure 3

PCA plots of the top two principal components for the 1000 Genomes dataset with 193 individuals and 8 million variable sites. The left-hand plot is based on the reliable genotypes of the overlapping variable sites in the low depth NGS data, the middle plot is performed by PCAngsd and the right-hand plot is performed by the ngsTools model.