Figure 4.
Prediction performance across methods and SNP sets for height. Gray, green, blue, and magenta bars correspond to linear, MLP, one-hot encoding MLP, and CNN methods, respectively. Average SE of R’s were ∼3 × 10−3. BEST, set with the 10k or 50k top most-associated SNPs; BRR, Bayesian Ridge Regression; CNN, Convolutional Neural Network; MLP, Multilayer Perceptron; UNIF, set in which the genome was split in windows of equal physical length and the most-associated SNP within each window was chosen.