Table 1.
Prediction of OsAOC homo-oligomer structures.
| No | Template* | Oligomeric state | Structure similarity† | |||
|---|---|---|---|---|---|---|
| OsAOC# | OsAOC(I)† | OsAOC(II)† | OsAOC(III)† | |||
| 1 | 2BRJ | Trimeric | 0.9834 | 0.9133 | 0.8461 | 0.7966 |
| 2 | 4H6B | Trimeric | 0.9670 | 0.8982 | 0.8315 | 0.7828 |
| 3 | 4REV | Trimeric | 0.6398 | 0.6092 | 0.5805 | 0.5500 |
| 4 | 5BU3 | Dimeric | 0.6050 | 0.5719 | 0.5319 | 0.5577 |
PDB accession code: 2BRJ (AtAOC2), 4H6B (PpAOC1), 4REV (Dirigent protein DRR206) and 5BU3 (Diels-Alderase PyrI4). Structure similarity is measured by TM (Template-based oligomer modeling)-align as described in Lee et al. (2013). It ranges from 0 (totally different) to 1 (identical).
Monomer subunit was generated by PyMol (N-terminal TP was automatically removed by SWISS-Model).
Monomer subunit was generated using the intensive mode of Phyre2 (Figure S6).