Table 3.
MinION sequencing details after basecalling and quality control.
| Virus | Isolate | No. of Reads sequenced | No. of reads mapped | % reads mapped | Average Genome Coverage | ISAV HPR |
|---|---|---|---|---|---|---|
| SAV | F1045-96 | 73,574 | 66,705 | 91 | 21,306 | — |
| SCO/4640/08 | 112,805 | 93,998 | 83 | 39,012 | — | |
| ISAV | SCO/4750/09 | 25,009 | 24,797 | 99 | 9,609 | HPR35 |
| CA/NB04-85-1/04 | 11,816 | 11,201 | 95 | 9,932 | Uncharacterised | |
| CA/NB7178/08 | 20,136 | 19,672 | 98 | 4,464 | Uncharacterised | |
| CA/F679/99 | 18,650 | 18,308 | 98 | 4,593 | Uncharacterised | |
| NO/Sotra/B797/92 | 13,410 | 13,192 | 98 | 4,950 | HPR1 | |
| SCO/4661/08 | 23,793 | 23,584 | 99 | 9,710 | HPR35 | |
| NO/Glessvær/2/90 | 39,343 | 38,463 | 98 | 19,232 | HPR2 |
ISAV HPR classification based on established genotypes outlined in Nylund et al. 2003.