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. 2018 Oct 30;5:272. doi: 10.3389/fvets.2018.00272

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Copyright © 2018 Price-Carter, Brauning, de Lisle, Livingstone, Neill, Sinclair, Paterson, Atkinson, Knowles, Crews, Crispell, Kao, Robbe-Austerman, Stuber, Parkhill, Wood, Harris and Collins.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Multiple South Westland herd infections. (A) Radial ML Phylogram illustrating the genetic relationship of the two types of M. bovis isolates detected during a South Westland breakdown investigation, to other type VNTR59/REA1/REA6 and VNTR53/REA11/REA12 M. bovis isolates in the database. Metadata for isolates from this herd are colored red, other livestock metadata are colored blue and wildlife metadata black. Brackets indicate close relatives of the breakdown isolates and are also described in the SNP table in (B). Also shown are the two different VNTR types, with numbering as described in the legend for Figure 3. (B) SNP tables illustrating the relationship of each type to its closest relatives. The coloring and numbering in this tables is as described in Figure 3. SNPs detected in the case 1 and in case 2 isolates are boxed within the table. The asterisk in the case 2 table indicates an isolate (AgR288) that was ruled out as a possible source of infection by this investigation.