Figure S3.

Motif Analysis of Region-Specific Sites that Define Anterior, Hindbrain, and Spinal Cord, Related to Figure 2

(A–C) Motif enrichment analysis performed using Homer on anterior (A), hindbrain (B) and spinal cord (C) specific sites shows distinct and common neural factors enriched at each AP level. For each factor (indicated on the left), the corresponding expression level determined by mRNA-seq (Gouti et al., 2014) in the same condition at D5 of the in vitro differentiation is shown (central column; error bars = SEM). The top 6 predicted motif logos are presented on the right. TPM = transcripts per million.