Table 3.
Relative abundances of fungal genera as determined by Illumina sequencing of 16S PCR of amplicons or by isolation on selective media; the comparison was performed at the end of the enrichment (step III).
| Fungal genus | ITS Illumina |
Fungal isolates |
||||
|---|---|---|---|---|---|---|
| S1 | S2 | S3 | S1 | S2 | S3 | |
| Acremonium | 0.001 | 0.003 | nd | 2.9 | nd | nd |
| Arthrinium | 2.0 | 0.4 | 0.3 | nd | nd | nd |
| Aspergillus | 1.8 | 2.0 | 0.8 | 8.6 | 8.7 | 19.4 |
| Aureobasidium | 0.9 | 0.3 | 0.3 | 2.9 | nd | nd |
| Bjerkandera | nd | nd | nd | nd | 4.3 | nd |
| Capnodiales_unclassified | 12.0 | 11.3 | 3.4 | nd | nd | nd |
| Ceriosporopsis | 0.2 | 0.2 | 14.8 | nd | nd | nd |
| Cladosporium | 0.2 | 0.6 | 0.1 | 8.6 | 13.0 | nd |
| Clonostachys | 11.0 | 0.6 | 0.5 | 2.9 | nd | nd |
| Epicoccum | nd | nd | nd | 2.9 | 4.3 | |
| Eutypella | nd | nd | nd | nd | 4.3 | 2.8 |
| Fusarium | 43.8 | 68.8 | 63.4 | 40.0 | 56.5 | 41.7 |
| Hypocrea | nd | nd | nd | nd | nd | 11.1 |
| Irpex | nd | nd | nd | nd | 4.3 | nd |
| Penicillium | 0.8 | 2.1 | 1.2 | 5.7 | nd | 2.8 |
| Phanerochaete | 0.5 | 1.7 | 0.3 | nd | nd | nd |
| Polyporus | nd | nd | nd | nd | nd | 2.8 |
| Pseudallescheria | 15.5 | 0.8 | 1.5 | 5.7 | nd | nd |
| Scedosporium | 0.01 | 0.01 | 0.12 | nd | 4.3 | 5.6 |
| Sulcatispora | nd | nd | nd | nd | nd | 2.8 |
| Trametes | nd | 0.1 | 0.04 | nd | nd | 2.8 |
| Saccharomyces | 0.9 | 0.7 | 0.1 | nd | nd | nd |
| Trichoderma | 3.6 | 0.4 | 0.5 | 20.0 | nd | 5.6 |
| Wallemia | 0.02 | nd | 0.02 | nd | nd | 2.8 |
| Trichosporon | 1.2 | 3.2 | 4.4 | nd | nd | nd |
Data are expressed as percentages (among 10065 sequences for Illumina data, among 94 strains for isolates).