| Bacterial and Virus Strains |
|
| MAX Efficiency DH10Bac™ |
Thermo Fisher |
Cat# 10361012 |
| Biological Samples |
|
|
| Mouse liver microsomes |
Sigma |
Cat# M9441 |
| Human liver microsomes |
Sigma |
Cat# M 0317
|
|
| Chemicals, Peptides, and Recombinant Proteins |
|
| Tunicamycin |
Sigma-Aldrich |
Cat# T7765; CAS: 11089-65-9 |
| uridine diphosphate n-acetyl [1-14C] D-glucosamine |
American Radiolabeled Chemicals |
Cat# ARC 0151
|
| Rifampicin |
Sigma-Aldrich |
Cat# R3501 |
| Uridine 5′-diphospho-N-acetylglucosamine sodium salt |
Sigma-Aldrich |
Cat# U4375 |
| C95-Dolichyl-MPDA |
Larodan |
Cat# 67-1095 |
|
H. sapiens DPAGT1 (1-408, N-terminal 6 x HIS tag, TEV cleavage site) |
This work |
N/A |
|
H. sapiens DPAGT1 (1-408, Val264Gly, N-terminal 6 x HIS tag, TEV cleavage site) |
This work |
N/A |
|
| Critical Commercial Assays |
|
| MemGold2 HT-96 screen |
Molecular Dimensions |
Cat# MD1-64 |
|
| Deposited Data |
|
|
H. sapiens DPAGT1 (WT) |
This work |
PDB: 6FM9
|
|
H. sapiens DPAGT1 (Val264Gly) |
This work |
PDB: 5LEV
|
|
H. sapiens DPAGT1 (Val264Gly) + UDP-GlcNAc + Mg2+
|
This work |
PDB: 6FWZ
|
|
H. sapiens DPAGT1 (Val264Gly) + Tunicamycin |
This work |
PDB: 5O5E
|
|
| Experimental Models: Cell Lines |
|
|
Spodoptera frugiperda (Sf9) insect cells |
Thermo Fisher |
Cat# 11496015; RRID:CVCL_0549 |
| HepG2 |
ATCC |
Cat# ATCC HB-8065 |
| HEK293 |
ATCC |
Cat# ATCC CRL-1573; RRID:CVCL_0045 |
| Raji |
ATCC |
Cat# ATCC CCL-86; RRID:CVCL_0511 |
| J774A.1 |
ATCC |
Cat# ATCC TIB-67; RRID:CVCL_0358 |
|
| Experimental Models: Organisms/Strains |
|
| Streptomyces chartreusis |
DSMZ |
Cat# 41447 |
| Bacillus subtilis EC1524 |
John Innes Centre |
N/A |
| Micrococcus luteus |
John Innes Centre |
N/A |
| Bacillus cereus |
DSMZ |
Cat# 345 |
| Escherichia coli |
Thermo Fisher |
Cat# ATCC 25922 |
| Staphylococcus aureus |
Thermo Fisher |
Cat# ATCC 29219 |
| Pseudomonas aeruginosa |
Thermo Fisher |
Cat# ATCC 27853 |
|
Mycobacterium tuberculosis H37Rv |
ATCC |
Cat# ATCC27294 |
| C57Bl/6 mice |
Taconic |
B6 |
|
| Oligonucleotides |
|
| Oligonucleotides |
See table S8 |
B6 |
|
| Recombinant DNA |
|
| pFB-LIC-Bse |
This paper |
N/A |
| DPAGT1 gene |
Source BioScience LifeSciences |
IMAGE:2821845 |
| pMSP12::GFP |
Addgene |
Cat# 30167 |
|
| Software and Algorithms |
|
| Prism 7 |
GraphPad |
www.graphpad.com |
| X-ray Detector Software (XDS) |
(Kabsch, 2010) |
http://xds.mpimf-heidelberg.mpg.de/ |
| CCP4 Suite |
(Winn et al., 2011) |
http://www.ccp4.ac.uk/ |
| PHYRE2 webserver |
(Kelley et al., 2015) |
http://www.sbg.bio.ic.ac.uk/phyre2 |
| MR_ROSETTA (phenix.mr_rosetta) |
(Terwilliger et al., 2012) |
https://www.phenix-online.org/documentation/reference/mr_rosetta.html |
| PHENIX |
(Adams et al., 2010) |
https://www.phenix-online.org/ |
| BUSTER (v.2.10.2 & v2.10.3) |
(Bricogne et al., 2017) |
https://www.globalphasing.com/buster/ |
| COOT |
(Emsley et al., 2010) |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
| PyMOL |
Schrödinger, LLC |
https://www.pymol.org/ |
| MOLPROBITY |
(Chen et al., 2010) |
http://molprobity.biochem.duke.edu/ |
| STARANISO |
Global Phasing Ltd |
http://staraniso.globalphasing.org |
| PDB2PQR |
(Dolinsky et al., 2004) |
http://nbcr-222.ucsd.edu/pdb2pqr_2.0.0/ |
| UCSF Chimera |
(Pettersen et al., 2004) |
https://www.cgl.ucsf.edu/chimera/ |
| Mass spectrometry software Qual Browser |
Thermo Fisher |
Xcalibur 2.2 |