Table 2.

Read mapping statistics

	Reads mapped (%)			Avg. coverage			Avg. read length
Alignment filter	–	80%	95%	–	80%	95%	–	80%	95%
Ath-WGA	99	44	34	40.5	17.4	13.4	8987	5568	5397
Ath-Clean	99	81	66	55.1	48.1	41.2	4690	4532	4697
Ath-Ctrl	95	72	57	34.2	29.2	24.8	5799	5583	5852

Statistics of read mappings with BLASR to the TAIR10 reference genome, calculated without filtering for a minimum read alignment length (‘-’) and after filtering for reads aligned with at least 80% or 95% nucleotide identity