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. 2018 Nov 5;6:198. doi: 10.1186/s40168-018-0580-7

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Longitudinal analysis of ART. a Beta diversity and b change in alpha diversity of HIV-negative individuals compared to HIV-positive pre- and post-ART initiation. c Two taxa observed in the cross-sectional cohort as significantly reduced with HIV and ART have significantly reduced relative abundance longitudinally (Wilcoxon signed-rank test; *p value < 0.05, NS not significant)