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. 2018 Nov 6;5:180219. doi: 10.1038/sdata.2018.219

Table 1. MOD-funded studies in the MOD database for preterm birth research as of January 2018.

ID Type of Data Patients Samples Principal Investigator Center Unprocessed Data Processed Data PubMed ID
*No individual level genomic data is available, only summary statistics and results.                
SDY465 (Data Citation 1) Microbiome 16S 47 4,122 David Relman Stanford University Raw reads Link to SRA .BIOM format 2628335726
SDY475 (Data Citation 2 CYTOF 23 95 Martin Angst Stanford University 3,000,000 cells per sample Cell Clusters 2619006327
SDY775 (Data Citation 3) Microbiome 16S 7 69 Samuel Parry and Frederic Bushman University of Pennsylvania Raw reads .BIOM format 2733872828
SDY1155 (Data Citation 4) RNA-Seq 15 75 Catalin Buhimschi Ohio Collaborative Sequencing Counts matrix 2745243529
SDY1164 (Data Citation 6) Microbiome 16s 136 2,177 David Relman Stanford University Raw reads .BIOM 2884794130
SDY1157 (Data Citation 7) CYTOF 28 112 Nima Aghaeepour and Brice Gaudilliere Stanford University 3,000,000 cells per sample Cell clusters 2886449431
SDY673 (Data Citation d8) Cell Free DNA and RNA Seq 50 188 Stephen Quake Stanford University ~20,000,000 reads per sample Counts matrix 2890405632
SDY1175 (Data Citation 8) Cell Free DNA Seq 16 58 Stephen Quake Stanford University ~20,000,000 reads per sample Abundance matrix 2883099933
SDY776* (Data Citation 9) Genotyping 1,705 1,705 Louis Muglia Ohio Collaborative Genotypes Link to dbGaP Association test results 2628479034,35
SDY1173* (Data Citation 10) Genotyping ~40k ~40k Louis Muglia Ohio Collaborative Genotypes Link to dbGaP Association test results 2887703135
SDY1206* (Data Citation 11) Microbiome 77 149 Molly Stout Washington University in St. Luis Raw reads link to Short Read Archive (SRA) Abundance matrix 2854998136
SDY1215* (Data Citation 12) Genotyping (Mitochondria) ~15k ~15k Neal Sondheimer University of Pennsylvanya in collab with Stanford Genotypes Link to dbGaP Association test results 2924952337
SDY1205* (Data Citation 13) Genotyping ~15k ~15k Marina Sirota and Atul Butte Stanford in collab with Ohio Collaborative Genotypes Link to dbGaP Association test results 2931770138