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. 2018 Nov 6;5:180222. doi: 10.1038/sdata.2018.222

Table 1. Versions of software and database used in this study.

Software/Database Application Version/Date
HGAP Genome assembly SMART analysis 2.2.1
CheckM Genome quality assessment 1.0.9
RNAmmer rRNA prediction 1.2
tRNAscan-SE tRNA prediction 1.3
BLAST Sequence comparison 2.7.1+
ARG-ANNOT Antibiotic resistance genes prediction May 2018
PHASTER Prophages prediction May 2018
DNAPlotter Genome map Artemis 17.0.1
BRIG Genome alignment 0.95
MEGA Phylogenetic analysis 7.0.26
OAT Average nucleotide identity calculation Jul 2018